Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0971 ATGTGTTTCATGGACAATTTTGGATCCCTCTTAGTCAATTTACTAAATTCTGTTATTAATTTTTGCGCCTTAACTAAATTTTATCATTTGATCCGCATATTTTCGCCCTCCCTCGGCCACTCATGGATCTTAGTTGAATGTTTTATTGTCGCAACTAAAAGGAAAAAACTCCCGCCAAAAGCTGTGGAAGAAAGAAGCCACCGGCCACCGCCACTGCACTGGGAACGGCAACATATCGGAATCGGGATGTACGGAACTCCGATAGAGAGGCACATGATTGCATATGGCTCCTCGGGTCCAAGTGGTTTAATGGATATACTCGACATTTATTTTCCCCAGCAGCTTTACTCGGTCGAACAAAGCTGGATCGACCTCACGTCTGCTCTCGTCTCTTTCTTTTCTTCTCCATCGGGCCAAAACTTATCTTCCCAGGTAAAAAATTATTATGGCAGCTTTGTCTTGCCACTTGACTTCCAGCTGTTCCAAAAAACATGTCATCTTGAGGTATTTTATAAGATGTTAGAGGAGAAACCGAAAATCACTCTCTTATGCATGAGCGCTGCAGTTCACAAGGTCCTCATTACCAAATGGGAGGATGACAAATTGGAGGATGGTGCAAAAGTAGACATCCGACTGCATAACTGTCCTGAAACTATGATTGCTCTGAAAAACTTAAAAGCAGCATATATTGAAAAAAGACACATTATAACACTTAGCGACTTCACAGGCAAACTTGTCTCAGTGCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGGCCTCTTGTCGTAGAAATGAATTTTGAATGCGGAAAGTGCAAACAAAGAATTAGGCGTATATTTCCTGATGGAAAATTTTCACCACCATCAATTTGCAATTTGAATGGCTGCAAGAGCAAAACCTTTAATCCATTGCGATCTACTGCTCAAGCTATAGATTTTCAAAAAATAAGGCTGCAAGAACAACTAAAACCTGAGGACCATGAAGAAGGACGAGTGCCTCGAACAGTGGAATGTGAGCTTATCCAAGATCTTGTTGATGCGTGCATACCTGGAGATGTGTTGACGGTTACTGGAATTATAAGAGGGATTAACACTTACATGGATATTGGAGGAGGAAAGTCGAAGAACAGAAACCAGGGATTTTACTATCTGTATATCGAAGCTGTTTCCATACAAAATTCCAAGTCACAGTCTATATCTGAGGATTTGCATGACTCTAATCCCAAAGAAAGACCAGCTGAGCTGCTTGACTTGTTTTCATTTTCATCCAGGGATTTAGAATTTATTGTGAAATTTTCAAAGGAGTACGGTTCAGATGTGTTTCGACAAATACTTCAATCTATATGCCCATCCATCTATGGACATGAGCTTGTTAAAGCTGGGATAACGCTGGCATTATTTGGGGGTGTACGAAAACATTCTATGGATCCTAATAAGGTTCCTGTAAGGGGAGACATTCATGTCATAATTGTTGGTGATCCTGGACTAGGTAAGAGCCAATTGCTACAAGCAGCCACAGCTGTTTCTCCACGAGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCCGTAGTCAAGGATCCTATGACTAATGACTATGCTTTTGAGGCTGGTGCTATGGTGCTGGCTGACAGTGGCTTGTGTTGTATTGATGAGTTTGATAAAATGTCAGCTGAACATCAGGCTCTGCTGGAGGCAATGGAACAGCAGTGTGTCTCTATTGCAAAGGCGGGACTGGTAGCAAGTTTATCTGCTCGAACGTCTGTCTTAGCGGCAGCAAATCCAGTTGGTGGTCATTATGACCGTGCAAAGACTGTGAATGAAAATTTGAAAATGAGTGCAGCTCTGATATCCCGATTTGACTTAGTTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAACGAGTCTCGGAGCACATTATGTCACTTCATGCTGGGAATGGACAACACACCCCAGCAGTTAAAAAGCAACGTGGAGATTTGCCTTCTGATTCAAGAATCACGGTAGCGCAGAATGCTGAAGGCATAGATTTGGGTGTTAGATCTGGTTCTTTAGTTTCAAGGTTGAGACTTGACCCACAAAGAGATAGTGATTTTGTTCCACTGCCTATTCAACTTCTTCGAAAATACGTTGCTTATGCAAGGAGTTTTGTCTTTCCAAGGATGTCCAAGCCAGCAGCAGAAATCCTGCAAAAGTTTTACCTTAAACTGAGAGACCATAATACTTCAGCTGATAGTACACCGATAACAGCAAGGCAACTAGAAAGTCTAGTGAGGTTGGCTGAAGCTCGAGCTCGGCTAGACTTGAGAGAAGAAATAAAGGCCCAGGATGCGATGGATGTTGTTGAAATAATGAAGGAATCCCTGTATGATAAATACGTTGATGAGCATGGCTTTGTGGATTTTGGTCGAAGCGGGGGGATGAGTCAACAGAAAGAGGCTAAACGCTTCCTAAGTGCCCTCAATAAACAATCAGAATTACAGCAGAAAGATTGTTTTTCAATATCTGAAATATATAGTCTGGCAGATAGAATTGGCCTAAAAGTTCCTGATATTGACACTTTCATCGAGAATTTAAACAGCGTCGGTTATCTACTCAAAAAGGGACCAAAGACATACCAGGTGTTATCCTCCTCATATACGCGAAGCCAATCGTCTAGGACAAAGGGCTAA 2694 0.4217 MCFMDNFGSLLVNLLNSVINFCALTKFYHLIRIFSPSLGHSWILVECFIVATKRKKLPPKAVEERSHRPPPLHWERQHIGIGMYGTPIERHMIAYGSSGPSGLMDILDIYFPQQLYSVEQSWIDLTSALVSFFSSPSGQNLSSQVKNYYGSFVLPLDFQLFQKTCHLEVFYKMLEEKPKITLLCMSAAVHKVLITKWEDDKLEDGAKVDIRLHNCPETMIALKNLKAAYIEKRHIITLSDFTGKLVSVRGTAVKVSTVRPLVVEMNFECGKCKQRIRRIFPDGKFSPPSICNLNGCKSKTFNPLRSTAQAIDFQKIRLQEQLKPEDHEEGRVPRTVECELIQDLVDACIPGDVLTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYIEAVSIQNSKSQSISEDLHDSNPKERPAELLDLFSFSSRDLEFIVKFSKEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDPNKVPVRGDIHVIIVGDPGLGKSQLLQAATAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYDRAKTVNENLKMSAALISRFDLVFILLDKPDELLDKRVSEHIMSLHAGNGQHTPAVKKQRGDLPSDSRITVAQNAEGIDLGVRSGSLVSRLRLDPQRDSDFVPLPIQLLRKYVAYARSFVFPRMSKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEIKAQDAMDVVEIMKESLYDKYVDEHGFVDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLKVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTRSQSSRTKG 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0971 897 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 140 833 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 SMART mcm 234 797 IPR031327 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 PRINTS Mini-chromosome maintenance (MCM) protein family signature 570 583 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 PRINTS Mini-chromosome maintenance (MCM) protein family signature 621 629 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 PRINTS Mini-chromosome maintenance (MCM) protein family signature 594 606 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 PRINTS Mini-chromosome maintenance (MCM) protein family signature 483 498 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 PRINTS Mini-chromosome maintenance (MCM) protein family signature 543 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 802 IPR027417 -
Dere02g0971 897 CDD MCM8_WHD 818 883 - -
Dere02g0971 897 FunFam DNA helicase MCM8 isoform X1 261 312 - -
Dere02g0971 897 SMART AAA_5 484 636 IPR003593 GO:0016887
Dere02g0971 897 Gene3D - 418 805 IPR027417 -
Dere02g0971 897 Pfam MCM OB domain 241 362 IPR033762 -
Dere02g0971 897 Gene3D - 261 311 - -
Dere02g0971 897 Gene3D - 240 363 IPR012340 -
Dere02g0971 897 ProSiteProfiles MCM family domain profile. 440 647 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 Pfam MCM AAA-lid domain 713 796 IPR041562 -
Dere02g0971 897 CDD MCM8 444 795 - -
Dere02g0971 897 Coils Coil 555 575 - -
Dere02g0971 897 Pfam MCM P-loop domain 438 651 IPR001208 GO:0003677|GO:0005524|GO:0032508
Dere02g0971 897 SUPERFAMILY Nucleic acid-binding proteins 147 364 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0971 Dere-ChrDere02 9226195 9234560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0971 102 883 Core DNA Replication Machinery Family AT3G09660 71.429 0.0 1149