Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0969 ATGGCTGATGGTCCGGCGAGTCCAGGCGGCGGCAGCCACGAGAGCGGCGAGCATAGCCCTCGCTCTAATGTCCGAGAGCAGGACAGGTACCTTCCCATCGCCAACATCAGCCGAATTATGAAGAAGGCGCTTCCTGCTAATGGAAAAATCGCCAAGGATGCCAAGGAGACTGTGCAGGAATGTGTTTCAGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGTGATGATTTACTTTGGGCGATGGCGACTTTAGGTTTTGAGGATTATATTGATCCGCTGAAGATTTACCTTTCCAGATACAGAGAGGGTGATACCAAGAGTTCTGCAAAGGGTGGGGATGCATCTACCAAGAAAGATGTTCAGCCTAGTTCTAATGCTCAGCTTACCCATCAAGGTTCTTTTCCCCAAGGTGTTAATTACACAAATTCTCAGGCTCAACATATGATGGTTCCTATGCAGGGTCCAGAGTAG 510 0.4902 MADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREGDTKSSAKGGDASTKKDVQPSSNAQLTHQGSFPQGVNYTNSQAQHMMVPMQGPE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0969 169 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere02g0969 169 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Dere02g0969 169 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Dere02g0969 169 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Dere02g0969 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere02g0969 169 FunFam Nuclear transcription factor Y subunit B-3 19 144 - -
Dere02g0969 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Dere02g0969 169 MobiDBLite consensus disorder prediction 130 162 - -
Dere02g0969 169 Gene3D Histone, subunit A 16 159 IPR009072 GO:0046982
Dere02g0969 169 MobiDBLite consensus disorder prediction 1 28 - -
Dere02g0969 169 MobiDBLite consensus disorder prediction 117 169 - -
Dere02g0969 169 SUPERFAMILY Histone-fold 27 144 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0969 Dere-ChrDere02 9218243 9221277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0969 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.706 3.12e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere02g0969 CBFD_NFYB_HMF 1.1e-27 CL0012