Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0964 ATGAACTCCGGCACTTCGAATTCTCAATCAATGGCGACCTCAACGCCCACTGATGGGTCTGGCAAGAAGGTGAGAAAGCCCTATACTATTACCAAGTCAAGGGAGAGCTGGACTGAGGAAGAGCACGACAAGTTTCTCGAGGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGCAGCCATGCCCAGAAATACTTTTTAAAGGTTCAAAAGAATGGTACAATAGCACACGTGCCTCCTCCTCGCCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCACCGAAGAATGTTTTGGTTCCATTGCCAGCATCCATGGCTTATGCTTCTTCAACAAACACCCTTGCACCTGGGTATGCCACATGGGAAGAAACTTCCATGCTGATCAACACTGGATCAAACAAATACATACCCTGTCAGGATGAAATCACCACCCTTCATGGAAATGAAGGCATGCATGCTTATTACCTTTCTGATATTGGATCAAAGGGGAAAGCAAGGATTAGCAACAGCAGTCTCAGTGGTGTTGGAAACTCTACTAGAATGCTACAAACTTCTGAGATGCCAAAGCAAGGCAAACAAGCTCCAGTGCTTCATGGTTTACCGGACTTTGCTGAGGTTTACAGCTTTATTGGAAGTGTATTTGATCCAGAAACGAAAGGCCATGTCCAGAAGCTGAAGGAAATGGACCCTATAAATTTTGAAACTGTTTTGTTGTTGATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAGCCCTTCAGGAAGGTCTTGTCATCATATGATGCCAATACCAAGACTGTAGAAGTCACTACAGGCATTGCTGCCAAAAAGGAAAAAAATGATCTATCATGCCAACCCGCTTAA 915 0.4383 MNSGTSNSQSMATSTPTDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKAPKNVLVPLPASMAYASSTNTLAPGYATWEETSMLINTGSNKYIPCQDEITTLHGNEGMHAYYLSDIGSKGKARISNSSLSGVGNSTRMLQTSEMPKQGKQAPVLHGLPDFAEVYSFIGSVFDPETKGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPFRKVLSSYDANTKTVEVTTGIAAKKEKNDLSCQPA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0964 304 SMART sant 33 81 IPR001005 -
Dere02g0964 304 MobiDBLite consensus disorder prediction 1 37 - -
Dere02g0964 304 MobiDBLite consensus disorder prediction 1 20 - -
Dere02g0964 304 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Dere02g0964 304 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Dere02g0964 304 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Dere02g0964 304 CDD SANT 36 79 IPR001005 -
Dere02g0964 304 MobiDBLite consensus disorder prediction 90 109 - -
Dere02g0964 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Dere02g0964 304 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Dere02g0964 304 Gene3D - 37 84 - -
Dere02g0964 304 PANTHER SWI/SNF COMPLEX-RELATED 9 263 - -
Dere02g0964 304 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Dere02g0964 304 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0964 Dere-ChrDere02 9178984 9183061 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere02g0964 Myb_DNA-binding 4.5e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0964 02 9178984 9183061 Dere02g0964 02 9178984 9183061 ECH