Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0960 ATGCCTCCTAAGCAGCAATCAAAAGCCGATTTAGCGAAGAAACAGAAGATCGTAGAGGATAAAACCTTCGGTCTCAAGAACAAGAACAAGAGCAAGAATGTGCAGAAGTATGTCCAGAGCCTCAAGCAGTCTGTACAGCCCCAGCCTGATCCTTCCAAAGTCGCTGCCAAGAAAAAGAAGGAGGAAGAAAAGGCCAAGGATAAGGAGTTAAATGATTTATTCAAAATTGCTGTTAGCCAGCCTAAAGTACCCCTTGGTGTCGATCCCAAGTCTGTATTATGTGAGTTTTTTAAGGTGGGACAGTGCACAAAGGGCTTTAAATGCAAGTTCTCACATGATTTGAATGTTCAAAGGAAAGGGGAAAAAATTGATATTTACAGCGATAAGCGTGACAAGGAAACCATGGAGGATTGGGACCAGGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAGCCGAGTATAATCAGAACAAACCAACTGATATAGTCTGTAAATACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAATGGCGGTAAGAACTGCCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCCCAAATGAAGGCTCTGTTAGAGGAAGAGTCCGAAAAAATATCGATTGAGGAAGAGATTGAAAATCAGCGTGCCAAAGTGAATACTTCGACTCCCATGACTCCTGAGCTATTTATGCTATGGAAGAAGAAGAAGATAGAAGAAAGAGATGCCAATTTGGCTGCACAACAGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGAGGCATATGACAAATACCAAAGAGAACCAGAATCAGATGACACTGAACAGGTTAGTTTTTTCTTCATGTATGCGGGCGACAATGCTGCTGAAGATGGTCCAAACACCTCAACGGCTGGCAGGGATGCAGAAGTTCCTGATGATGATGATGAACTCGACATGGATGAGTTGAATGAATTGGAAGCTAGTTTATCGAAGACATCCATCCAAACAAAGGAGTCAGGAACTGATGCTTAA 1092 0.4322 MPPKQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPQPDPSKVAAKKKKEEEKAKDKELNDLFKIAVSQPKVPLGVDPKSVLCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKKAEYNQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKISIEEEIENQRAKVNTSTPMTPELFMLWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPESDDTEQVSFFFMYAGDNAAEDGPNTSTAGRDAEVPDDDDELDMDELNELEASLSKTSIQTKESGTDA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0960 363 Coils Coil 208 228 - -
Dere02g0960 363 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 360 - -
Dere02g0960 363 Coils Coil 246 266 - -
Dere02g0960 363 Gene3D - 205 279 - -
Dere02g0960 363 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Dere02g0960 363 MobiDBLite consensus disorder prediction 38 66 - -
Dere02g0960 363 Gene3D - 87 204 - -
Dere02g0960 363 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Dere02g0960 363 MobiDBLite consensus disorder prediction 310 335 - -
Dere02g0960 363 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Dere02g0960 363 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Dere02g0960 363 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Dere02g0960 363 Pfam DRG Family Regulatory Proteins, Tma46 215 299 IPR032378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0960 Dere-ChrDere02 9162752 9165928 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g0960 DFRP_C 1.4e-18 No_clan