Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0929 ATGGGAAACGCACACGGTCATCGCAAACACCGTAACTCCATACCTCCGTCCTATATATATGGTGCTCCGCCTCACCCTCAACCCCCAACCTCTGCTCCTACGACCCACAACCACCTCACCTCCAATATGCTGTCTTTACCTTATTCCCATGTCGACTCCAGTTTGCGAGCTCTCGCTGGCCAAGCTGAAGGCTTTGGTCGATGTGCAATCGGTGGGCTTCACGGTCCCCTTTATCATGTTACTACTTTAGCAGATGATGGACCAGGATCTCTACGTGATGGTTGTCGCAGAAAAGAACCATTGTGGATTGTATTTGAGGTTTCAGGCACTATTCATCTTTCGTCTTACTTGAGTGTGTCATCTTACAAGACTATTGATGGCCGGGGTCAAAGGATTAAACTCACTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATATGCAACCTAGAGTTAGAAGGCGGTAGAGGGCCTGATGTTGATGGCATTCAGATCAAGCCTAATTCAAAGCACATATGGATAGATCGTTGCAGCCTCCGTGATTTTGACGATGGACTGATAGATATTACACGAGAAAGCACAGATATTACTATTTCTAGATGTCACTTTTCTCAACATGACAAAACAATGCTTATTGGGGCTGATCCCTCACACAATGGTGATAGATCCATAAGGGTCACTATTCACCATTGTTTCTTTGATGGGACACGACAGCGGCATCCTCGAGTTAGATTTGCGAAAGTACATTTGTACAATAATTACACCAGAAACTGGGGCATATATGCTATTTGTGCAAGTGTGGAATCACAGATATACTCGCAATGTAACATCTATGAAGCAGGGCAAAAGAAGGTGGCATTTAAGTATCTTTCCGAAAAGGCAGCAGACAAGGAGGCAGCAGCAACTGGTCACATATGGTCTGAAGGAGACCTATTCATAAGTGGAACTCAGGCAGGGTTAATGACCGAGAGCGTCCCATGTGCTGCATTTCATCCTAGTCAACACTATACAACGTGGACGGTTGCTTCTCCTACAGAAGATCTAAAACAGCTTCTGCATCACTGCACTGGATGGCAATGTGTTGTACGCCCGGCAGATCAGCCCCTGGTTGCATAG 1122 0.4581 MGNAHGHRKHRNSIPPSYIYGAPPHPQPPTSAPTTHNHLTSNMLSLPYSHVDSSLRALAGQAEGFGRCAIGGLHGPLYHVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHNGDRSIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAICASVESQIYSQCNIYEAGQKKVAFKYLSEKAADKEAAATGHIWSEGDLFISGTQAGLMTESVPCAAFHPSQHYTTWTVASPTEDLKQLLHHCTGWQCVVRPADQPLVA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0929 373 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Dere02g0929 373 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Dere02g0929 373 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Dere02g0929 373 Gene3D - 47 357 IPR012334 -
Dere02g0929 373 SUPERFAMILY Pectin lyase-like 59 367 IPR011050 -
Dere02g0929 373 MobiDBLite consensus disorder prediction 1 38 - -
Dere02g0929 373 SMART amb_all 108 286 IPR002022 -
Dere02g0929 373 Pfam Pectate lyase 117 279 IPR002022 -
Dere02g0929 373 PANTHER PECTATE LYASE 18-RELATED 50 324 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0929 Dere-ChrDere02 8873316 8876388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0929 83 368 Polysaccharide Lyase AT3G55140 76.923 2.64e-169 473
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0929 02 8873316 8876388 Dere02g0929 02 8873316 8876388 ECH