Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0920 ATGAAGAGACAGACAGTTAACGAAGGAACAGATAGCTTCGACATAGCCAACTGTCTGATGATGCTGTCCCATGCCCAAGAGATGATAAAGCCCCAGAAAAGCTTACTACCCTCTGCTGAATTCGAATGCAAGACCTGCAAGCGCAAGTTCTCGTCGTTTCAGGCACTTGGTGGGCACAGGGCTAGCCACAAGAGGCCCAGGCTCGACGGGGACGATGACCTCAAAGCACAGGCTAAGTCTCTGAGCTTAGCAACGAAGCCTAAAGTGCACGAGTGCTCCATTTGTGGGGTGGAGTTCGCTATGGGGCAAGCCCTAGGAGGCCACATGAGGAGGCACAGAGCAACCATGGACCAAGGCTTTTCTTCCAACGTGGCTCCCAAAGTGCCAGTTCTGAAGAGATGTAATAGCAAGAGGATTTTGTGCTTGGACCTTAACTTGACCCCTCTCGAGAATGACTTGAAGCTCTTGTTTGGAAAGATGGCACCTAAAGTTGATGCCTTCCTCTGA 507 0.5089 MKRQTVNEGTDSFDIANCLMMLSHAQEMIKPQKSLLPSAEFECKTCKRKFSSFQALGGHRASHKRPRLDGDDDLKAQAKSLSLATKPKVHECSICGVEFAMGQALGGHMRRHRATMDQGFSSNVAPKVPVLKRCNSKRILCLDLNLTPLENDLKLLFGKMAPKVDAFL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0920 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Dere02g0920 168 PANTHER ZINC FINGER PROTEIN ZAT5 9 152 - -
Dere02g0920 168 SUPERFAMILY beta-beta-alpha zinc fingers 41 112 IPR036236 -
Dere02g0920 168 Gene3D Classic Zinc Finger 38 112 - -
Dere02g0920 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Dere02g0920 168 SMART c2h2final6 41 63 IPR013087 -
Dere02g0920 168 SMART c2h2final6 90 112 IPR013087 -
Dere02g0920 168 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Dere02g0920 168 Pfam C2H2-type zinc finger 41 66 - -
Dere02g0920 168 Pfam C2H2-type zinc finger 89 114 - -
Dere02g0920 168 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0920 Dere-ChrDere02 8789584 8790090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0920 2 165 C2H2 Transcription Factor Family AT2G37430 51.445 7.84e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g0920 zf-C2H2_6 6.5e-12 CL0361