Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0907 ATGGGAAAACGGCTCAGCCTTCCAAAAGTTAAATCTCGCCCGGGAACCAAGCTTTTCGTTTCAGTTTGTTGCCGCCCTGAGCGTTACAAACCAAACCCTAACCCTTCCACAACCCCTTCTATCCTTCAGATCTCATCGGACAAAAGACTACGGTATTTTTCACGAATCTTAGATCTGCTTGGTTCTTTGATGGGAGACGGAGCAGTTTGTGTCGAAGTATTAGCAGATAGAAGGAGTGAAAACGATGAATCTAGAACGGAACTGAAACGGGACTACCACTGTACTGAACTTGACCCCTCTCCGAATAAGAAACAAGCAAAAGAAATTTCAAATGATGACGTGCGCTCTGAGGTGTCCAATCCCAATATTTCTTCGAAAGAGAATGTCTTAGCCTTTCAAGATATTAGTAGCCAGCCAAGTGAGTTGGCAAATACTAATCAGACAGAGTGTGGGGAAGTAACGTCTACATGTTTGGAGAATTCAAGTTCGGATGAGACTTTGAGTGATGGAGGGGGTGATCGTAATAATAATACTCAGAATGATAAGGGCACGAATAGTGCTGCAATGACTTCCTGTGTTGTGTTGGAAATTCCGAAGCATGCTAGTTCGTCTGGAATCAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATTATCAGTCACTTGATACTACTAATAGGCATCCATATGATGAAGAGCCTTTGGTGAGGGCTGATTGTAATTCAGGGATGTTAGAAAGCTCATGTGGAACAGAATATGTTCAAACCAGAGATTATAATTTGTATGCTCGAAATATGGAATTGAAAATGTCAAAGAAGGTAATCCCTAGCTGCTATCCTACAAATGTTAAAAAGCTGTTATCAACTGGCATTCTTGATGGAGCTCGAGTGAAGTACATTTATACTTATAATGCAGGAAAGATTGAGCTACCGGGGATTATTCAGGGTGGTGGATATTTGTGTGGCTGCTCAATGTGCAGTTTCTCCAGAGTTCTAAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCCAAGACTAGACATCCAAATAATCACATATTCCTGGAAAATGGAAAACCAATATATAGTATTATACAGGAAATGAAAACTGCTCCACTCAGCTTATTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCCGTCAATGAAGAGTCTTTCCAGGTTTGGAAAGCAAGTCTTCTGCAAAGCAATGGGAAGGTTGAGGCGGAAAAAGATTTTAACTCCAAGCTTGTTGGCATGCCTCCTACAAACATAAGATCAAGCTCCTATACTTCTAACTCAGGTCTACAGCCAAAGAAAAGCACTGATGGTTGCACTAAGAGAAGGGATAATGACTTGCATAGGTTACTTTTTATGCCAAATGGACTACCAGATGGTGCTGAATTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAAGGAAATGGTATAGTTTGTGGTTGTTGTGATAGAGAGATAAGCCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCTCGACGTCAACCTTATCGCCATATATATACTTCCAACGGATTAACACTGCATGATATAGCTCTCTCATTGGCAAATGGTCAAAACCTTACCACGGGAGATAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGGGATTTGATTCTTTGCAATAGTTGCCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGAAAGTTGTTGGCGTTGTCTGAATTGTAGAGACAGTGCTGGCAGCAGCAGAGAGTCTTCTACAGCAAGGCCAATTATGATAAGGTTGACGCAGGTTGTTAAAGCACCAGAATTTGAAATGGGTGGTTGTGTTGTTTGCAGGGAACATGATTTTAGTGTTGCTAAATTTGATGAGCGAACAGTTATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGGTGCTTGCGGGACAGTGGGCTATGTGAGTTGGAAGAATTGCCCAAGGACAAGTGGTTTTGTTGCGATGATTGCAATCGAATATATGTGGCCGTACAGAATTCAGTTTCTGCTGGAGCGGAGATTATACCAGCTTCCTTGTCAGTTCTAATAAATAGGAAGCATGAGGAGAGGGGCTTATTTTTTGATGGAGGAATCAATGATATCCAGTGGCGTATTCTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCATTACTTTCACGGGCTGCTGCAATTTTTCGTGAGTGTTTTGATCCCATTGTTGCAGTATCTGGACGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCAGGCCAAGAGTTTGGGGGGATGTATTGCGTTGTTTTAATTGTGAAGTCTGTTGTTGTATCTGCTGGGCTACTAAGGATTTTTGGTCGTCATGTTGCTGAGCTTCCACTGGTGGCTACAAGTAGAGAACATCAAGGAAAAGGTTATTTTCAAGTGTTATTCTCTTGCATAGAGAAGTTGCTTTCTTCCCTGAATGTGGAAAAGCTGGTGCTTCCTGCTGCTGAGGATGCCGAATCAATTTGGACTAAAAAATTAGGCTTCCGAAAGATGACTGAAGATCAGTTATCCAAATGTCTGAGAGAGGTGCAGCTCACCCTCTTCAATAAAACTTCGATGCTGGAGAAGACAGTGCAGCTGGTGACGGAATGA 2685 0.4194 MGKRLSLPKVKSRPGTKLFVSVCCRPERYKPNPNPSTTPSILQISSDKRLRYFSRILDLLGSLMGDGAVCVEVLADRRSENDESRTELKRDYHCTELDPSPNKKQAKEISNDDVRSEVSNPNISSKENVLAFQDISSQPSELANTNQTECGEVTSTCLENSSSDETLSDGGGDRNNNTQNDKGTNSAAMTSCVVLEIPKHASSSGIRKITFKFSKKKEDYDYQSLDTTNRHPYDEEPLVRADCNSGMLESSCGTEYVQTRDYNLYARNMELKMSKKVIPSCYPTNVKKLLSTGILDGARVKYIYTYNAGKIELPGIIQGGGYLCGCSMCSFSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIQEMKTAPLSLLDEVIKNVAGSSVNEESFQVWKASLLQSNGKVEAEKDFNSKLVGMPPTNIRSSSYTSNSGLQPKKSTDGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNSCPRAFHAACLGLQCVPESCWRCLNCRDSAGSSRESSTARPIMIRLTQVVKAPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDSGLCELEELPKDKWFCCDDCNRIYVAVQNSVSAGAEIIPASLSVLINRKHEERGLFFDGGINDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAVSGRDLIPVMVYGRNISGQEFGGMYCVVLIVKSVVVSAGLLRIFGRHVAELPLVATSREHQGKGYFQVLFSCIEKLLSSLNVEKLVLPAAEDAESIWTKKLGFRKMTEDQLSKCLREVQLTLFNKTSMLEKTVQLVTE 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0907 894 Gene3D - 720 887 - -
Dere02g0907 894 SMART PHD_3 622 679 IPR001965 -
Dere02g0907 894 SMART PHD_3 549 590 IPR001965 -
Dere02g0907 894 MobiDBLite consensus disorder prediction 79 114 - -
Dere02g0907 894 MobiDBLite consensus disorder prediction 155 185 - -
Dere02g0907 894 ProSitePatterns Zinc finger PHD-type signature. 623 678 IPR019786 -
Dere02g0907 894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 681 IPR013083 -
Dere02g0907 894 ProSiteProfiles Zinc finger PHD-type profile. 620 681 IPR019787 -
Dere02g0907 894 ProSitePatterns Zinc finger PHD-type signature. 550 589 IPR019786 -
Dere02g0907 894 SUPERFAMILY FYVE/PHD zinc finger 545 592 IPR011011 -
Dere02g0907 894 Pfam Tify domain binding domain 483 532 IPR032308 -
Dere02g0907 894 Pfam Tify domain binding domain 315 370 IPR032308 -
Dere02g0907 894 FunFam PHD finger family protein 721 888 - -
Dere02g0907 894 ProSiteProfiles Zinc finger PHD-type profile. 547 592 IPR019787 -
Dere02g0907 894 SUPERFAMILY FYVE/PHD zinc finger 621 676 IPR011011 -
Dere02g0907 894 FunFam PHD zinc finger protein 621 681 - -
Dere02g0907 894 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 773 864 IPR016181 -
Dere02g0907 894 CDD PHD1_AIRE 549 589 - -
Dere02g0907 894 PANTHER AUTOIMMUNE REGULATOR 74 888 - -
Dere02g0907 894 MobiDBLite consensus disorder prediction 422 443 - -
Dere02g0907 894 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 537 615 - -
Dere02g0907 894 MobiDBLite consensus disorder prediction 420 450 - -
Dere02g0907 894 MobiDBLite consensus disorder prediction 79 122 - -
Dere02g0907 894 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 537 617 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0907 Dere-ChrDere02 8676094 8690310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0907 64 894 PHD Transcription Factor Family AT3G53680 53.213 0.0 901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0907 02 8676094 8690310 Dere02g0907 02 8676094 8690310 ECH