Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0903 ATGGGTCCGACAAGGTGGCTTTATCTTTTCGGTGTTCCATTTGATTGGGCCGTTTACAGGTTTTTTATATTTATTAATCATCGTAGTTTTGGTCCTCAATTTGCTAGAATGTCTCTGTTTCCTGTACCTGATTTTGGTGATATGTTACTCAATATGACTTCATTTTTGAAGCCTGAAAATGCTCTAAAAAGAGCAGAAGAATTAATCAATGTCGGGCAGAAGCAGGATGCTTTGCAAACACTTCACGGCCTTATCACCTCAAAAAGATACAGAGCATGGCAGAAGACACTTGAAAGGATCATGTTTAAATATGTAGAACTGTGTGTAGACATGCGGAAAGGGCGGTTTGCAAAAGATGGGCTCATTCAGTATCGTATTATATGTCAGCAAGTTAATGTTAGTTCACTGGAGGAGGTGATCAAGCATTTCATGCATCTGTCAACTGAGAAAGCTGAACAAGCACGCAGCCAGGCACAGGCCTTAGAAGAGGCTCTTGATGTTGATGATTTAGAGGCAGATAAAAGGCCAGAGGACTTGATGCTTAGCTATGTGAGTGGGGAGAAAGGAAAAGACAGATCTGATCGGGAGCTTGTTACTCCATGGTTTAAATTTCTTTGGGAAACATATAGGACGGTGCTTGAAATATTACGGAACAACTCAAAACTGGAAACTCTCTATGCTATGACAGCACATCGGGCTTTCCAATTTTGTAAGCAATATAAGCGAACAACAGAGTTCCGCAGGCTCTGTGAAATTATAAGAAACCATCTAGCCAATCTTAATAAATATCGAGACCAACGGGACCGACCTGATCTTTCTGCACCTGATAGTTTGCAACTATATCTTGATACCAGATTTGAGCAGCTCAAAGTTGCCACTGAACTTGAACTTTGGCAGGAAGCTTTTCGATCAATTGAAGATATACATGGACTAATGTGCATAGTCAAGAAAACACCCAAGGCATCCTTGATGGTTCTTTACTATGCTAAGCTGACTGAAATATTTTGGATATCATCAAGTCATCTTTATCATGCATATGCGTGGTTCAGGCTATTTCTGCTGCAGAAGAGTTTCAATAAGAATTTGAGTCAGAAGGATCTGCAATTGATAGCTTCATCCGTTGTTCTGGCTGCACTTTCAGTGCCTCCCCATGATCACACTCACGGTGCTTCTCATTTGGAATTGGAGCATGAAAAAGAGAGAAATTTGAGGATGGCTAATCTCATTGGTTTCAACCTTGAAAGTAAACCTGAGAGCAGAGAAGTGCTTTCAAGGTCATCCCTTCTTGCTGAACTGGCGTCCAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATTTACCATCTCCTGGAACATGAGTTTTTTCCCTTAGATCTTCCATTAAAAGTTCAGCCTCTGCTAACTAAAATATCCAAGTTGGGGGGTAAGCTTTCCACTGCTTCTTCTGTACCAGAGGTGCAGCTGTCTCAGTATGTCCCGGCACTGGAAAAACTAGCTACCTTGAGGTTGCTACAGCAGGTGTCCATTGTCTACCACACAATGAAGATTGAGACCTTGTCTGGGATGATCCCCTTTTTCGATTTTTCTGTTGTAGAAAAGATTTCTGTGGATGCTGTTAAGCATAAATTTGTATCCATGAAAGTTGACCACATGAGAAGTGTTGTAATTTTCTGCAAGACGAGTCTTGAGTCTGATGGCTTAAGGGATCACCTGGCTAATTTTGCTGAACATTTGAATAAGGCAAGACAAATGATTCATCCTCCTGATAGAAAACCATCAAAAATTGGAGCTTTCCTTCCCACTTTGACTGAGGTTGTGGCCAAGGAACATAAGAGGCTGCTTGCTCGGAAATCAATTATTGAGAAGCGGAAAGAAGAACAAGAACGGCAGCTTCTTGAAATGGAACGAGAGGAGGAGTCAAAGAGACTAAGACTGCAGAAAATAACTGAAGAAGCAGAACAGAGAAGACTTGCCAATGAGTATGAGCAGAGGAAGAATCAGAGAATCCTCAGGGAAATAGAAGAAAGGGAAATGGAAGAAGCCCAAGCGTTGCTTCAGGAAGCTGAAAAACGCATTAAAAAGAAGGGAAAGAAGCCAATCATAGAGGGTGAAAAACTGACCAAGCAAACATTGATGGAGTTGACTTTGACTGAGCAACTCCGGGAAAGACAGGAAATGGAAAAGAAACTGCAAAAATTAGCTAAAACCATGGACTTTTTGGAAAGAGCCAAAAGAGAAGAGGCTGCTTCCCTGATTGAAGCTGCATATCAAAAGCGCCTAGTTGAAGAGAAGCTTCTTCATGAGCGTGAGCAACAGCTAGAGATTGAGGTTAGCAAACAACGCCATGAGGGAGATCTCAAGGAGAAGGAAAGGCTGGCTCGAATGATGGGCAATAAAGAGATTTATCAAGAGAAAGTTGTTAGTCGTCGTCAGGCAGAATTTAATAGACTGAGGCGGGAAAGAGAGGAGCGAATCTCAAGGATTTTACAATCAAGGAGACAAGAGAGGGAAAAGATGAGGAAGTTGAAGTTTTATCTGAGGTTGGAAGAAGAGAGACAGCAAAAATTGCATGAAGAGGAGGAAGCTCGAAAGCGCGAAGAGGCTGAGAGGCGGAAAAAGGAAGAGGCTGAACGCTTGGCAAAATTGGCTGAGATAGCTGAAAAGCAGAGGCAAAGAGAGCGGGAACTTGAAGAGAAGGAGAGGCTAAGGAGAGAAGCACTGTTGGGCAGAAGTAGTGAAGCAGCGGTGAAGCCTGTTGAACCTTCAGCCCGTCCATTGGAACCTGGATCTACTGCTCCCGCAGCTGCTGCAGCAGCCGCAGCTGCACCAACCCCTGGGAAATATGTCCCTAAGTTCCGGCGAGCTGAAAGTGCAACATCTGTTGCTCCTCCAGAAACTGATCGTTGGACAAACTCCAGCAGCAGGCAGGATGGTGACAGGTGGCGTAGTGATGATCGAAGACCTGGTTTTGGTGTTGGTGGGGGTTCAAGGTCATCTTCATCATGGTCTTCATCAAGGCGTGGATCTGATCGTTGA 3042 0.4349 MGPTRWLYLFGVPFDWAVYRFFIFINHRSFGPQFARMSLFPVPDFGDMLLNMTSFLKPENALKRAEELINVGQKQDALQTLHGLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLETLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPDSLQLYLDTRFEQLKVATELELWQEAFRSIEDIHGLMCIVKKTPKASLMVLYYAKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDHTHGASHLELEHEKERNLRMANLIGFNLESKPESREVLSRSSLLAELASKGVMSCVTQEVKDIYHLLEHEFFPLDLPLKVQPLLTKISKLGGKLSTASSVPEVQLSQYVPALEKLATLRLLQQVSIVYHTMKIETLSGMIPFFDFSVVEKISVDAVKHKFVSMKVDHMRSVVIFCKTSLESDGLRDHLANFAEHLNKARQMIHPPDRKPSKIGAFLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLANEYEQRKNQRILREIEEREMEEAQALLQEAEKRIKKKGKKPIIEGEKLTKQTLMELTLTEQLRERQEMEKKLQKLAKTMDFLERAKREEAASLIEAAYQKRLVEEKLLHEREQQLEIEVSKQRHEGDLKEKERLARMMGNKEIYQEKVVSRRQAEFNRLRREREERISRILQSRRQEREKMRKLKFYLRLEEERQQKLHEEEEARKREEAERRKKEEAERLAKLAEIAEKQRQRERELEEKERLRREALLGRSSEAAVKPVEPSARPLEPGSTAPAAAAAAAAAPTPGKYVPKFRRAESATSVAPPETDRWTNSSSRQDGDRWRSDDRRPGFGVGGGSRSSSSWSSSRRGSDR 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0903 1013 Pfam PCI domain 424 559 IPR000717 -
Dere02g0903 1013 FunFam Eukaryotic translation initiation factor 3 subunit A 403 545 - -
Dere02g0903 1013 Coils Coil 144 171 - -
Dere02g0903 1013 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 492 583 IPR000717 -
Dere02g0903 1013 MobiDBLite consensus disorder prediction 890 912 - -
Dere02g0903 1013 FunFam Eukaryotic translation initiation factor 3 subunit A 319 393 - -
Dere02g0903 1013 Gene3D UVR domain 268 318 - -
Dere02g0903 1013 MobiDBLite consensus disorder prediction 890 1013 - -
Dere02g0903 1013 Coils Coil 612 653 - -
Dere02g0903 1013 Gene3D - 404 544 - -
Dere02g0903 1013 Gene3D - 319 393 - -
Dere02g0903 1013 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 52 1007 IPR027512 GO:0005852
Dere02g0903 1013 Coils Coil 718 745 - -
Dere02g0903 1013 MobiDBLite consensus disorder prediction 974 989 - -
Dere02g0903 1013 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 52 1013 IPR027512 GO:0005852
Dere02g0903 1013 MobiDBLite consensus disorder prediction 855 878 - -
Dere02g0903 1013 ProSiteProfiles PCI domain profile. 367 564 IPR000717 -
Dere02g0903 1013 FunFam Eukaryotic translation initiation factor 3 subunit A 268 319 - -
Dere02g0903 1013 Coils Coil 666 700 - -
Dere02g0903 1013 Coils Coil 847 907 - -
Dere02g0903 1013 MobiDBLite consensus disorder prediction 996 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0903 Dere-ChrDere02 8629315 8635992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0903 52 1012 Eukaryotic Initiation Factors Gene Family AT4G11420 71.779 0.0 1312