Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0897 ATGTGTTTGGAGTGCTCCGGCAAGCACCGCGGCCTCGGTGTTCACATCTCATTCGTCCGATCCGTTACGATGGATTCTTGGTCTGATATCCAGATCAAGAAAATGGAAGCTGGCGGCAACGACAAGCTCAACGCCTTTTTCGCCCAGTATGGCATCCCCAAGGAGACTGATATCGTCGCCAAGTACAATACCAATGCTGCCTCAGTTTATAGGGACCGAATTCAGGCCATCGCCGAGGGCCGACCGTGGCGGGATCCACCGGTTGTGAAGGAAAACACTGGCCTCGGCAAGAGTAAGCCTCCGTTGCCCCAAAACAGCGCCGGGAGCAATTACAGGAATAATGGAGGGTGGGATAGTTGGGACAACGACGATGGATTCAAATCTCATAACGATATCAAGCGGAATCATTCGATGGGGGATGTTAGGGCGGTGAATGGAGGTGGCGCGGGAAGCACACCCGTGAGATCGAGGTCAACTGAGGATATCTACACGCGGTCGCAATTGGAGGCCTCCGCTGCCAACAAGGAGAGCTTTTTTGCTCGAAAGATGGCGGAGAACGACTCCAGACCTGAAGGGCTTCCTCCGTCACAAGGTGGCAAGTACGTTGGGTTCGGATCTATTCCCGCGCCGTCCCGGACTAGTAATCCGCAAAACGATTACATGTCTGTTGTTTCTCAGGGACTTGGTAAATTATCATTGGTTGCTGCCTCTGCGGCTCAAGTTGTTCAGGCCGGCAGCAAAGAGATTTCTGCCAAGGTAAGGGATGGTGGTTATGATCACAAAGTCAATGAGACTGTCAATGTTGTCACTCAGAAAACATCAGAAATTGGACAAAGAACATGGGGACTCATGAAAGGGGTCATGGCAATGGCTTCCCAGAAGGTTGACGAGTACACTAGAGATAACACAAATTGGAGAAATGATAGCTGGCAACGGAATGAAAATGATAGAAATGGTTACTATCAGGAATTCAATCAAGAAAACAAAGGCTGTAATTCCTCTACTGGAGGACAACCTTCATCAGGTGGGCAGTTTAATATTCAAAGATCAAGCTCTTGGGATGATTGGGACCACAAGGATACTTCTAGGAAGGAAGAACCAGCTAGGGGATCTGCTCCTCGCTCAACAGGTGGACAATCTAATAATTACGGCTCAAGCTCTTGGGATGACTGGGACTACAAAGATAATACTAGGAATAAAAATTTAGGTGAAGGATCAGCCCTGCACTCATCAAGCGGGCAGTCTAAAACTTACAGCTCAATCTCCTGGGATGATTGGGACCACAAAGAAACTAGGAAGGAAGAACCATCTAAAGTATCAGAAAGCTGTTGGTCCTAA 1338 0.4865 MCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNAFFAQYGIPKETDIVAKYNTNAASVYRDRIQAIAEGRPWRDPPVVKENTGLGKSKPPLPQNSAGSNYRNNGGWDSWDNDDGFKSHNDIKRNHSMGDVRAVNGGGAGSTPVRSRSTEDIYTRSQLEASAANKESFFARKMAENDSRPEGLPPSQGGKYVGFGSIPAPSRTSNPQNDYMSVVSQGLGKLSLVAASAAQVVQAGSKEISAKVRDGGYDHKVNETVNVVTQKTSEIGQRTWGLMKGVMAMASQKVDEYTRDNTNWRNDSWQRNENDRNGYYQEFNQENKGCNSSTGGQPSSGGQFNIQRSSSWDDWDHKDTSRKEEPARGSAPRSTGGQSNNYGSSSWDDWDYKDNTRNKNLGEGSALHSSSGQSKTYSSISWDDWDHKETRKEEPSKVSESCWS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0897 445 MobiDBLite consensus disorder prediction 324 351 - -
Dere02g0897 445 SUPERFAMILY ArfGap/RecO-like zinc finger 1 74 IPR037278 -
Dere02g0897 445 MobiDBLite consensus disorder prediction 82 116 - -
Dere02g0897 445 MobiDBLite consensus disorder prediction 128 160 - -
Dere02g0897 445 MobiDBLite consensus disorder prediction 373 390 - -
Dere02g0897 445 MobiDBLite consensus disorder prediction 184 217 - -
Dere02g0897 445 MobiDBLite consensus disorder prediction 400 421 - -
Dere02g0897 445 SMART arf_gap_3 1 83 IPR001164 GO:0005096
Dere02g0897 445 CDD ArfGap_ArfGap1 1 80 - -
Dere02g0897 445 Gene3D Arf GTPase activating protein 1 88 IPR038508 -
Dere02g0897 445 MobiDBLite consensus disorder prediction 98 116 - -
Dere02g0897 445 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 83 IPR001164 GO:0005096
Dere02g0897 445 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 395 IPR044519 GO:0005096|GO:0016192
Dere02g0897 445 MobiDBLite consensus disorder prediction 352 370 - -
Dere02g0897 445 MobiDBLite consensus disorder prediction 422 439 - -
Dere02g0897 445 MobiDBLite consensus disorder prediction 324 445 - -
Dere02g0897 445 Pfam Putative GTPase activating protein for Arf 1 64 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0897 Dere-ChrDere02 8577475 8580833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0897 1 50 C2H2 Transcription Factor Family AT4G05330 49.020 4.07e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3006 01 44584292 44587233 Dere02g0897 02 8577475 8580833 CCT
Dere02g0897 02 8577475 8580833 Dere02g0897 02 8577475 8580833 ECH