Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0882 ATGGATGACGATGAATACCCAATACTCATGTCTTCTGGCTTCCCTCGCCCCAAGAAACCCTTGCCAGACGACGGAATCATGGAGCTCTTTTGGCAAAACGGTCCGGTCGTGATGCAGAGCCAGAACCAACGGCCTCTCAGAAAACCGCCGCCGGCGAGGCATACCAGCGATGTATTTCCTTCAGGACCATCTACGGCGAGGGAGATTGAGATTCGACCCTCGAAGCAAGTAGAAAGCTACAATAATCAACATCTGTTCATGCAAGAAGATGAAATGACTTCCTGGCTTCACTATCCCATCGTCGACGATTCTCCCTTGGATCACAATTTCTGTGCCGACCTCCTCCTCTACCCGCCACCCGCTACAATCAACAATAGCAACCAAGTCAACAACAGCACTACCATGCAAACTAATGTTCGTACATCTCAGGTGACGGAGCTCCGTCAGCCGTCGACGTCAGTGGCTCCTCCTCGGCCACCGATACCGCCGACAAGGAGACCGGAGACGAAGATACATGATTCCGTGTACTTCTCGAAACACAATGCGAGAGTTGAACCAGGGCCGTCGAGTTCGAGGACCGCGGCGAAGGAATCAACGGTTGTGGATTCATGCGATACTCCTGCTGCGGCGGCGGCGGCGGCTTCCAGAGTTTCGGAGACCGTGAGAAGCTCGGCAGAGCCAACAGAAGGAGACGCCTGCCGCGGAAGCATGAGCACTACCGGAGTAGCGGCGCCTTCGACGACCACCGTCGGCGGAGGAACCGATACGATGACGTACGACATGACGGAAATGTCGTCTCCAGGAGGATCAAGTGGGAGTGCAGAACCTCCTCACAGGTCGCCGGCGGAGGATCGGAAGCGGAAGGGGCGGGAGGCCGATGACTCTGAGTGTCACAGCGAGGATGTGGATTATGAATCTGCGGAAGCAAAAAAACAAGTTCGAGGATCAAAATCTACAAAGAGATCTCGTGCTGCAGAAGTTCATAATCTATCTGAGAGGAGGCGTCGAGACAGGATTAATGAAAAGATGAGAGCTTTACAAGAACTTATTCCTCGGTGCAATAAGTCTGACAAAGCGTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCGTTGCAGTTACAAGTGCAGATGATGTCCATGGGCTGTGGTATGGTACCTATGATGTATCCAGGAATGCAACAGTACATGCCTGCAATGGGAATGGAAATGAGAATGAATAGGACAGTAATGCCATTTCCTAACATGTTAGCTGCTGCATCAGCTTTGCCAGCAGCCACTGCGGCTGCTCATTTGGGACCAAGGTTCTCTGTCCCTCCTTTCCACATGCCCCACGTTCCTGCACCTGATTTGTCCAGAATGCAAGCAGCCAACCAGTCAGATAATATGCTTACCTCACTTGCTGCATCTGATCCATCTCAGTCACGGATCCCAAACCTTGCTGATCCTTATCACCAATACCTTGGCCCCCACCAGATGCAGTTACAATTAATGCAGAATCAGACAATGATCCAACAAAATGTCAGCAAGCCAAGTACCAGTAGGGGCCATGAGAACCCAGAAAATCATCAGGCAGAAAATAGATGA 1587 0.5135 MDDDEYPILMSSGFPRPKKPLPDDGIMELFWQNGPVVMQSQNQRPLRKPPPARHTSDVFPSGPSTAREIEIRPSKQVESYNNQHLFMQEDEMTSWLHYPIVDDSPLDHNFCADLLLYPPPATINNSNQVNNSTTMQTNVRTSQVTELRQPSTSVAPPRPPIPPTRRPETKIHDSVYFSKHNARVEPGPSSSRTAAKESTVVDSCDTPAAAAAAASRVSETVRSSAEPTEGDACRGSMSTTGVAAPSTTTVGGGTDTMTYDMTEMSSPGGSSGSAEPPHRSPAEDRKRKGREADDSECHSEDVDYESAEAKKQVRGSKSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMYPGMQQYMPAMGMEMRMNRTVMPFPNMLAAASALPAATAAAHLGPRFSVPPFHMPHVPAPDLSRMQAANQSDNMLTSLAASDPSQSRIPNLADPYHQYLGPHQMQLQLMQNQTMIQQNVSKPSTSRGHENPENHQAENR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0882 528 MobiDBLite consensus disorder prediction 233 273 - -
Dere02g0882 528 PANTHER TRANSCRIPTION FACTOR PIF3 19 521 IPR044273 GO:0003700|GO:0006355
Dere02g0882 528 MobiDBLite consensus disorder prediction 143 168 - -
Dere02g0882 528 Gene3D - 318 381 IPR036638 GO:0046983
Dere02g0882 528 MobiDBLite consensus disorder prediction 278 337 - -
Dere02g0882 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 390 IPR036638 GO:0046983
Dere02g0882 528 MobiDBLite consensus disorder prediction 1 21 - -
Dere02g0882 528 Pfam Helix-loop-helix DNA-binding domain 327 373 IPR011598 GO:0046983
Dere02g0882 528 MobiDBLite consensus disorder prediction 184 200 - -
Dere02g0882 528 MobiDBLite consensus disorder prediction 40 67 - -
Dere02g0882 528 MobiDBLite consensus disorder prediction 505 528 - -
Dere02g0882 528 CDD bHLH_AtPIF_like 323 386 IPR047265 -
Dere02g0882 528 SMART finulus 329 378 IPR011598 GO:0046983
Dere02g0882 528 MobiDBLite consensus disorder prediction 180 337 - -
Dere02g0882 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Dere02g0882 528 FunFam Basic helix-loop-helix transcription factor 318 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0882 Dere-ChrDere02 8402289 8405468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0882 23 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.240 2.81e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g0882 HLH 1.9e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3020 01 44684353 44688900 Dere02g0882 02 8402289 8405468 CCT
Dere02g0882 02 8402289 8405468 Dere02g0882 02 8402289 8405468 ECH