Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0880 ATGAATATATATACAGACCTCTCCGTTCGGGCCTTCCACCCACATCCTCATCATCTTCCACTGGTTTTACTAGTCCCCGAAGGTTTCAGAGAAATTAAAGCAAGTTCTGTGTTCAGGAGAATGGAAGGTAATTCGGAGAGGGAATTAACAGCACTTGTTGTAGATGACGACATTGTGATCAGAAAGATCCATGAGAAGCTGTTGAACAGTTTCGGAGTGAGAAACCAGGTGGTGAGAAATGGGAAAGAAGCCATAGAAATTCACTGCTCTGGCCAAAGTTTTGACCTAATTCTCATGGACTTGGATATGCCCATTATGAATGGCATCGAGGCAACAAGGGAACTTCGATCAATGGGGATTCAAAGCAGGATCGCAGGAGTATCAGCAAGGTGTGTGGAAGCACAAGTTCAAGAGTTCATGGAAGCAGGCCTTGATGACTACCAAGAGAAACCCTTGACCATTGCTAAGCTTTCTTCCATACTTCACAAGATCAACCCTAATTAA 504 0.4385 MNIYTDLSVRAFHPHPHHLPLVLLVPEGFREIKASSVFRRMEGNSERELTALVVDDDIVIRKIHEKLLNSFGVRNQVVRNGKEAIEIHCSGQSFDLILMDLDMPIMNGIEATRELRSMGIQSRIAGVSARCVEAQVQEFMEAGLDDYQEKPLTIAKLSSILHKINPN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0880 167 SMART REC_2 49 161 IPR001789 GO:0000160
Dere02g0880 167 SUPERFAMILY CheY-like 48 164 IPR011006 -
Dere02g0880 167 PANTHER TWO-COMPONENT RESPONSE REGULATOR 45 165 - -
Dere02g0880 167 ProSiteProfiles Response regulatory domain profile. 50 165 IPR001789 GO:0000160
Dere02g0880 167 Pfam Response regulator receiver domain 52 160 IPR001789 GO:0000160
Dere02g0880 167 CDD REC_hyHK_CKI1_RcsC-like 52 161 - -
Dere02g0880 167 Gene3D - 29 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0880 Dere-ChrDere02 8394566 8395368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0880 49 157 Response Regulator Gene Family AT3G04280 44.144 3.95e-25 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere02g0880 Response_reg 2.7e-21 CL0304