Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0851 ATGCAGGGTAGTTCTTCTAGTGGGTCGATGCAAACGGAGTCTAAAGAGGATAACTTAGTCCTTTCTTCGGAGGACTCATCATGCCCAGATGAATCCGAGCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCGTCCTCATGTGAAGTCCCAGCCAACTCCAGCGACTCAATATGCTAGAATTTTGACGGCTAAGGATTTTCCTTCGTCAGCTTCATCATCCTCCTCTTCCTCTTCCTCTCCTAACGTAACATCTGGCACCAAGAGAGCTGCTGAGGCTGTTGTCGCTACAAACGGTCCCAGTCAGGTTGTTGGATGGCCTCCTCTTGGAGCATATAGAATGAACAGCTTTAATAATAACCATGCAAAATCACCAGCCACTGATGGATTCAATTCTATGGTTGAAAAAAGTAAGAGTAATCAAACAGCTGTAAGGAAGAGTACTGACAATGGCAGTGATAAAAACATTAGCGCCAAAGAAAAAGGACACGTCAGGAGTTCCCTATTGGTGAAGGTAAATATGGATGGGATACCAATTGGAAGGAAGGTTGACTTGAGTGCTCATAGTTCCTATGAGACCTTAGCACGAACTCTGGAAGATATGTTTAACGAACCAACTCCAGTTGTCACTTGCAAAGGATTATATGGGGAGGACCGTGGCATTGAAGTTGGAGCAAAAAAGAGACACTCAAAATTGCTGGATAGATCTTCCAAGTTTGTGCTAACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGGGTATGTTTCTTAGCTCTGTGAGGAGGCTTAGGATTATGAGGACATCTGAGGCAAATGGACTTGCACCGAGATTTGAGGAGAAGAACAGCAGACTGAGAAGTGAACGCACGTAG 885 0.4463 MQGSSSSGSMQTESKEDNLVLSSEDSSCPDESELELGLGLSLSRPHVKSQPTPATQYARILTAKDFPSSASSSSSSSSSPNVTSGTKRAAEAVVATNGPSQVVGWPPLGAYRMNSFNNNHAKSPATDGFNSMVEKSKSNQTAVRKSTDNGSDKNISAKEKGHVRSSLLVKVNMDGIPIGRKVDLSAHSSYETLARTLEDMFNEPTPVVTCKGLYGEDRGIEVGAKKRHSKLLDRSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRFEEKNSRLRSERT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0851 294 ProSiteProfiles PB1 domain profile. 166 274 IPR000270 GO:0005515
Dere02g0851 294 MobiDBLite consensus disorder prediction 122 157 - -
Dere02g0851 294 Gene3D - 161 284 - -
Dere02g0851 294 MobiDBLite consensus disorder prediction 65 86 - -
Dere02g0851 294 FunFam Auxin-responsive protein 161 282 - -
Dere02g0851 294 MobiDBLite consensus disorder prediction 1 27 - -
Dere02g0851 294 Pfam AUX/IAA family 56 281 IPR033389 -
Dere02g0851 294 SUPERFAMILY CAD & PB1 domains 163 270 - -
Dere02g0851 294 MobiDBLite consensus disorder prediction 122 150 - -
Dere02g0851 294 MobiDBLite consensus disorder prediction 1 89 - -
Dere02g0851 294 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 277 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0851 Dere-ChrDere02 8056792 8059860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0851 170 281 B3 DNA Binding Superfamily AT1G59750 33.036 1.04e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere02g0851 AUX_IAA 1.3e-59 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3048 01 45011894 45015171 Dere02g0851 02 8056792 8059860 CCT
Dere02g0851 02 8056792 8059860 Dere02g0851 02 8056792 8059860 ECH