Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0838 ATGGGTATGTCTGGGGCACTGCCTTCATCCTTGTCGGTCCTTCCTATGCCAATTGGAGAGACATATACCAAGTTTTCTGATTCTCAGCCGGCTTTTGTTGCACAAGATCTTATGACTGGGCCTATAACTCATTCCAGTAATTTAAATTCCAGTGGAGCAGTTGGGCACATGTTTTCATCTTCCCCTGGATATTCAACTGATCTTCATCACTCATCCCTTTCACCTCATGGAAAACACTCAAGAAATGCTCATTTCATTTCACAGTCATCCAGTAACATGGCTTCATTGCCATTTTCATATTCTTCAAATAGTGAACCACTTCCTTCTACAACACCAAATCATTATTTCAAAGAAAACAGTGCTTCCTGGCATACAGAACCTCTGCCAAACTTTCTTGATTTTCCTGCAAATACCATCAATGAGAATAGTCAAGCAGAAAGCAGTGCTGGTACTATCATGGCATCTGAGGAGTTTTGTAAGCGAAATGATTGGCAAGAGTGGGCTGACCAACTTATAAGTGATGATGACACTTTGACTTCTAATTGGAATGACCTTCTTACTGACAACATCCAAGACCTTGAGCCAAAGGTGGCATGCCAGGTTTCAAAATCATCTTCGCATGTGCCAGGACACCAGTCTCAAGGTCAACAGAAGCTTCCTGCTTCCTTTATAGACAATTGCATTGTTGCTCCCCCCTCTTCCTCAGCAAATTCTGCGCCTGCCAAGCCACGGATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTAAACCACCTTGGTGGCAGTGAAAGAGCTACACCAAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATACCATGTTAAGAGCCACTTGCAGAAATACAGGACAGCTAGATATAGACCAGAACCATCTGAAGGATCGTCAGAGAAGCATTTAACTTCCATTGAAGAGATGCCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGATTGCAGATGGAGGTTCAGAAGCGTTTGCATGAACAGCTTGAGATTCAACGAAATCTACAGCTGCGAATAGAAGAACAAGGGAGGGTCCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGCACTGACAAGAAGGCATCGTCATCTACCATGGAGGATCCATCTGGAGTGTCTTCAGACGTTATCAGAGATTGTCCTGCCAAAAGTGAAGTGGAAGCCTCCCAAGTGGATGACCGTTGCAGGTCAGGACGTGATCAAGCTAATGGCAGTACTACAGTTGAGGAAAGCTCTCTGGATGAGGGTAAGAAGAATGATGGTCATGAAAATCAGGCTTCTGAGAGTCCTATGCAACAAACTAGTGAAGACAGTGCTCAAGCGTCAAAACGGCAGAGGACAGATGAGTAA 1407 0.4435 MGMSGALPSSLSVLPMPIGETYTKFSDSQPAFVAQDLMTGPITHSSNLNSSGAVGHMFSSSPGYSTDLHHSSLSPHGKHSRNAHFISQSSSNMASLPFSYSSNSEPLPSTTPNHYFKENSASWHTEPLPNFLDFPANTINENSQAESSAGTIMASEEFCKRNDWQEWADQLISDDDTLTSNWNDLLTDNIQDLEPKVACQVSKSSSHVPGHQSQGQQKLPASFIDNCIVAPPSSSANSAPAKPRMRWTPELHEAFVEAVNHLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPEPSEGSSEKHLTSIEEMPSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRVLQMMFEKQCKSGTDKKASSSTMEDPSGVSSDVIRDCPAKSEVEASQVDDRCRSGRDQANGSTTVEESSLDEGKKNDGHENQASESPMQQTSEDSAQASKRQRTDE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0838 468 Coils Coil 330 350 - -
Dere02g0838 468 MobiDBLite consensus disorder prediction 297 317 - -
Dere02g0838 468 MobiDBLite consensus disorder prediction 399 418 - -
Dere02g0838 468 MobiDBLite consensus disorder prediction 374 468 - -
Dere02g0838 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 299 IPR017930 -
Dere02g0838 468 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 206 463 IPR044848 GO:0003700
Dere02g0838 468 FunFam Myb family transcription factor 241 299 - -
Dere02g0838 468 NCBIfam myb-like DNA-binding domain, SHAQKYF class 242 296 IPR006447 GO:0003677
Dere02g0838 468 Gene3D - 241 300 - -
Dere02g0838 468 Pfam Myb-like DNA-binding domain 244 295 IPR001005 -
Dere02g0838 468 SUPERFAMILY Homeodomain-like 240 296 IPR009057 -
Dere02g0838 468 MobiDBLite consensus disorder prediction 444 459 - -
Dere02g0838 468 Pfam MYB-CC type transfactor, LHEQLE motif 327 374 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0838 Dere-ChrDere02 7917884 7922264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0838 37 412 G2-like Transcription Factor Family AT4G28610 51.163 1.60e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere02g0838 Myb_DNA-binding 2.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3058 01 45106822 45112704 Dere02g0838 02 7917884 7922264 CCT
Dere02g0276 02 2755137 2757961 Dere02g0838 02 7917884 7922264 CCT
Dere02g0838 02 7917884 7922264 Dere02g0838 02 7917884 7922264 ECH
Dere01g3058 01 45106822 45112704 Dere02g0838 02 7917884 7922264 ECH