Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0836 ATGACAACCTTTGACAAGGCTCCTGCTCTCCTCTTGCACATACTCTTGCTGTGTCTTCTTCCACTGAAGATAACTGCATCACTGAGAACAGAAGCAGAAGTTCTCGTCAAATGGAAAAACAGTTTGTCTCCTCTTCCATCTTCTCTCAACTCATGGTCCCTCACCAATCTGGACAACCTTTGCCATTGGGGTGCCATTGTTTGTGACAGTACTAATACAACAGTGTCAGAGATAAGCCTCTCGGGGGCAAATGTTTCTGGGACACTTATGGGGTTGGATTTTGCTTCCCTCCCAAATCTCACCCACCTCAACCTCAACAACAACGATTTTAGTGGGACAATACCATCTGCTATTGGCAACCTCTCCAAGCTCATTCTCTTGGACTTGGGAAACAACTTATTTGATGGGGCACTGCCTACTGAGCTAGACCAGCTGAAGGAACTTCAATATTTGAGTTTTTACAACAACAACCTTAAAGGGACCATTCCCAATCAGATCACGAATCTCCTAAAGGTATGGCATCTAGACTTTGGATCAAACTACTTTATCAATCCTTCTGATTGGTCAAAATATTCAGGCATGTCTTCCTTGACCCACCTCAGTTTGGCTCTCAATAAATTCACTTCTGAATTTCCAAGTTTCATTCTAGAGTGTCAAAACTTGAGATATCTTGACCTGTCTCACAATAATATTAGCCTGATACCAGAGTTGTTGTATACCAATTTGGGCAAGCTTGAATATTTAAATCTGACCAATTGTGGGCTAGAAGGACAATTGCCATCAAACTTGTCCAAGCTTTCCAATCTCAAAGAAATTCATCTGAATGTTAACAAATTTAATGGTTCTATTATCATGGCCATAGGATTGATATCAGGTCTACAAATTCTTGAATTGAACGAGAATTCACTCCAAGGGGAAATTCCTTCCTCTCTGGGCCAACTTAGTGAGCTATCGCATCTTGATCTCCGCATGAATTTCTTGAATTCGACAATTCCTTCTGAGCTTGGTCTCTGTAGCAATCTAACCTACTTGGCTTTGGCAAAGAATTATTTGACTGGCTCTTTGCCTATGTCCTTATCCAATCTGACCAAAATTAAAGACTTGGGTTTATCAGATAATTTATTTTCTGGACAAATTCCTGCTTCGCTGATCTCTAATTGGATTGAGTTGGCTTCTTTGCAAATTCAAAACAATTCATTCGAGGGGAAAATTCCTGCAGAGATTGGACTTTTGACAAAAATCAATTTTCTCTATCTTTACAATAATCAATTCTCTGGTCCTATCCCTCCTGAGATTGGAAACTTGAAAGAAATGAACGAACTAGACCTTTCTGCAAACCAATTCTCTGGTCCGATTCCTTCAACCATAGGAAGTCTTAAAAACATTACAGTCATAAATCTTTCCTTCAATAATCTCTCAGGAACCATTCCCATGGAAATTGGAAACCTTACTTCATTGCAAATTTTCAATGTCAACAATAATCTTTTATATGGAGAGTTGCCAATGACTATTTCCCAGCTAACGGAGTTACAATTACTTTCTGTGTTCACTAATAAATTTTCGGGCAACATTCCCAGAGATTTTGAGAAGTATAGCCCAAATTTGAGACAAATATACATTTCAAATAACAGCTTCTCAGGAGAACTGCCGCCTGACTTGTGCAGTGGTTTTGCACTTGTGGACTTGATGGTTAATAACAATAGCCTTTCAGGACCATTGCCAAACTGCTTGAGAAATAGTTCAGCACTAACAAGGGTGAAGCTTGAAAGAAATCGCTTCACTGGAAACATCACAGAAGCATTTGGGGTTCACCCAAGTCTTACATCTATCACACTTAGTGACAATCAGCTTGTTGGTGAACTTTCTCCAGAATGGGCTGAATGTTTAAACTTGACCAGGATAGAGATGGGTAACAATAAACTTTTTGGAAAAATTCCACCTGAGCTAGGTAAGTTAAGCCAATTGAAATATCTAAGCCTACACTCCAATGAATTCACTGGCAGCATTCCACAAGAAATAGGAAATCTAAGGCAGCTGTACTTGTTCAACTTGAGCAGTAACCGTTTGATAGGAGAAATCCCCCAGAGTATCGGTAGATTGGCTCAGCTTTATTATCTTGATTTATCAAATAACAACTTCACCGGAAGCATTCCAGAAGAGCTTGGTGATTGTGACAGTTTAATGAGCTTGAATTTAAGCCATAACAATCTAGTTCGGGAGATACCATCTGAACTTGGCAATCTGTTCTCGCTCCAATACTTCTTAGACCTCAGCAGTAACTCTCTTTCAGGGTCAATTACTCAAAACCTTCAAAAGCTCATTCATTTGGAAATCCTGAATGTCTCACACAATCATCTTTCAGGGACAATCCCACAATCATTTTCAAGTATGCTCAGTCTACAGTCCATCGATTTTTCTTACAACAACTTGACAGGTCCAATCCCCACTGATGGTATTTTCCAACTAGCAACTTCTGAAGCTTACGTTGGAAATTCTGGTTTGTGTGGCAAGGCAAAAGGATTAATTGCCTGCTCCATAGAATCTTCCTCAGAAAAATCTAGTGGGATAAACAAAAAGGTTCTTCTTGGTGTTGTTATACCAGTTTGTGGGTTATTAATTTTTGGGGTGATTGTTGTTGGAATCCTAGTGTCCTGTCGACGGACCAAACTTCTTGATGAAGAGACCAAAGATGCTACACTGTATGAAAAAGCGGTGTGCACAATAAGGGGACGAAACGAAAAATTCACATTTACTGAAATTGTTAAAGCCACAGATGACTTCAATGACAAATACTGCATCGGAAGAGGAGGTTTTGGAAGTGTTTACAAAGCAGCATTACCTACAGGTCTAGTTGTCGCCGTCAAAAGACTCAATATTACAGATTCTACAGACATTTCAGATGAGAATCTTCGGAGCGTTGAGAATGAAATAAGAACACTTACGGAAGTGAAGCACCGAAACATCATAAAGCTTTTTGGGTTCTGTTCCAACAGGGGACATGTATACTTGGTTTACGAATATGCAGAGAGAGGAAGTTTGGGAAAAGTGTTGTATGGAGAGGAAATGAAAACGGAGCTAAGCTGGCCTCAAAGGGTGAAAATTGTGCAAGGAATAGCACAAGCAATTGCGTACCTACACAGCGACTGTAACCCACCCATTGTGCACCGAGATGTAACATTGAATAATATATTGCTTGACTTAGAAGTTGAACCTCACCTTGCGGATTTTGGCGTAGCGAAGCTTCTTAGTCCCAATTCAACAAGCTGGACCTCAGTTGCTGGCTCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTAGGAGAGTCACAGAGAAGTGCGATGTTTATAGTTTTGGAGTCGTGGCGCTAGAGATAATTTTGGGAAAGCAACCTGGAGATCTCTTGGCTACGTTGTCGTCAATGGAAGATCCACGGCTTTTTCTCAAGGATGTGATAGACCAAAGACCTCCACCTCCGACGGCTCAATTAGGTGAAGTGATAGCGTTCATAATGACTATAGCCTTGGCGTGTACGCGTACTGTTCCCCAGTCTAGACCCACGATGCGTTTTGTGGCTCAAGAACTATCGGCTCAAGCGCGAGCTTGTCTAGCTGAACCGTTTGGAACGAGGAACTAG 3636 0.4092 MTTFDKAPALLLHILLLCLLPLKITASLRTEAEVLVKWKNSLSPLPSSLNSWSLTNLDNLCHWGAIVCDSTNTTVSEISLSGANVSGTLMGLDFASLPNLTHLNLNNNDFSGTIPSAIGNLSKLILLDLGNNLFDGALPTELDQLKELQYLSFYNNNLKGTIPNQITNLLKVWHLDFGSNYFINPSDWSKYSGMSSLTHLSLALNKFTSEFPSFILECQNLRYLDLSHNNISLIPELLYTNLGKLEYLNLTNCGLEGQLPSNLSKLSNLKEIHLNVNKFNGSIIMAIGLISGLQILELNENSLQGEIPSSLGQLSELSHLDLRMNFLNSTIPSELGLCSNLTYLALAKNYLTGSLPMSLSNLTKIKDLGLSDNLFSGQIPASLISNWIELASLQIQNNSFEGKIPAEIGLLTKINFLYLYNNQFSGPIPPEIGNLKEMNELDLSANQFSGPIPSTIGSLKNITVINLSFNNLSGTIPMEIGNLTSLQIFNVNNNLLYGELPMTISQLTELQLLSVFTNKFSGNIPRDFEKYSPNLRQIYISNNSFSGELPPDLCSGFALVDLMVNNNSLSGPLPNCLRNSSALTRVKLERNRFTGNITEAFGVHPSLTSITLSDNQLVGELSPEWAECLNLTRIEMGNNKLFGKIPPELGKLSQLKYLSLHSNEFTGSIPQEIGNLRQLYLFNLSSNRLIGEIPQSIGRLAQLYYLDLSNNNFTGSIPEELGDCDSLMSLNLSHNNLVREIPSELGNLFSLQYFLDLSSNSLSGSITQNLQKLIHLEILNVSHNHLSGTIPQSFSSMLSLQSIDFSYNNLTGPIPTDGIFQLATSEAYVGNSGLCGKAKGLIACSIESSSEKSSGINKKVLLGVVIPVCGLLIFGVIVVGILVSCRRTKLLDEETKDATLYEKAVCTIRGRNEKFTFTEIVKATDDFNDKYCIGRGGFGSVYKAALPTGLVVAVKRLNITDSTDISDENLRSVENEIRTLTEVKHRNIIKLFGFCSNRGHVYLVYEYAERGSLGKVLYGEEMKTELSWPQRVKIVQGIAQAIAYLHSDCNPPIVHRDVTLNNILLDLEVEPHLADFGVAKLLSPNSTSWTSVAGSYGYMAPELAQTRRVTEKCDVYSFGVVALEIILGKQPGDLLATLSSMEDPRLFLKDVIDQRPPPPTAQLGEVIAFIMTIALACTRTVPQSRPTMRFVAQELSAQARACLAEPFGTRN 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0836 1211 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Dere02g0836 1211 Pfam Leucine rich repeat 196 255 IPR001611 GO:0005515
Dere02g0836 1211 Pfam Leucine rich repeat 677 737 IPR001611 GO:0005515
Dere02g0836 1211 Gene3D Transferase(Phosphotransferase) domain 1 1009 1204 - -
Dere02g0836 1211 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1053 1065 IPR008266 GO:0004672|GO:0006468
Dere02g0836 1211 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 533 848 - -
Dere02g0836 1211 Gene3D Ribonuclease Inhibitor 189 503 IPR032675 -
Dere02g0836 1211 ProSitePatterns Protein kinases ATP-binding region signature. 933 955 IPR017441 GO:0005524
Dere02g0836 1211 SMART LRR_typ_2 194 218 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 411 435 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 145 169 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 483 507 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 700 724 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 533 556 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 652 676 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 726 748 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 242 266 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 97 121 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 773 796 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 219 241 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 797 822 IPR003591 -
Dere02g0836 1211 SMART LRR_typ_2 314 338 IPR003591 -
Dere02g0836 1211 SUPERFAMILY Protein kinase-like (PK-like) 912 1195 IPR011009 -
Dere02g0836 1211 FunFam Leucine Rich Repeat family protein, expressed 188 283 - -
Dere02g0836 1211 ProSiteProfiles Leucine-rich repeat profile. 220 241 IPR001611 GO:0005515
Dere02g0836 1211 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 423 1195 - -
Dere02g0836 1211 Pfam Leucine Rich Repeat 775 796 IPR001611 GO:0005515
Dere02g0836 1211 FunFam Nuclear pore complex protein NUP107 28 186 - -
Dere02g0836 1211 FunFam MDIS1-interacting receptor like kinase 2 1008 1201 - -
Dere02g0836 1211 SUPERFAMILY L domain-like 48 383 - -
Dere02g0836 1211 FunFam Leucine-rich repeat receptor protein kinase MSP1 891 1007 - -
Dere02g0836 1211 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Dere02g0836 1211 Gene3D Ribonuclease Inhibitor 504 845 IPR032675 -
Dere02g0836 1211 SUPERFAMILY RNI-like 289 617 - -
Dere02g0836 1211 Gene3D Phosphorylase Kinase; domain 1 888 1007 - -
Dere02g0836 1211 Pfam Protein kinase domain 929 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0836 1211 ProSiteProfiles Protein kinase domain profile. 927 1208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0836 1211 FunFam Leucine-rich repeat receptor-like protein kinase TDR 287 532 - -
Dere02g0836 1211 SUPERFAMILY RNI-like 504 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0836 Dere-ChrDere02 7900063 7903792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0836 10 646 Receptor kinase-like Gene Family AT4G08850 31.875 5.88e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere02g0836 Pkinase 1.2e-45 CL0016