Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0828 ATGAACTGCCTATGCTCAGGGGAGCAATCAAGAAGAGAAGAAAATATGGTTCCTTCATCTGGATCTATTGCAATCAAGGGTTATTCTGTGAATGAGGTGTCTTGTCCAGCCAGTCAAATTGACAAGAAGCCAGATACTAGCAATATAGAAGAAGCCGAATCATCCCTTCGTGAAAGTGGTTGTTTGAACTATGAGGTCTGTAATTTTCACTTTGTGGCTCTTGTTATATGCAATCTGCGGGAAGCTAGAGCTCTTTTGGGAAAATATGAATATCAGAAAGGAAATATAGAAGCCGCTTTACAAGTTTTTGAGCGAATAGATTTAGGGGTTGTGACGTCCATGATTAAAAATTCCCTTGCCAAAAGGGTAAAACGCCATAAGAGACATTCTGAGAATTATGTTACACCGTCACTGTCTATATATGCTGTTGGCTTAATGATGGAAGCGGTCTTCCTAAAAGCAAAGTCTTTGCAAGTTCTTGGAAGGTTTAAAGAAGCTGCCCTATCTTGCAAAGTTATTCTGGACATAGTTGAATCTTCATTACCCCAAGGCTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAAACTCTGAGCAAGGCAGTTGAGTTGCTTCCTGAATTATGGAAACTTGCTGATTGTCCGCATGAAGCCATCATGTCCTACCGGTGGGCACTTCTTCATAAGTGGAATCTTGATGCAGTAACTGCAGCAAAAATCCAGAAAGAGTTTGTTGTTTTGCTTCTATATAGTGGAGCGGAAGCAAGCCCCCCAAGTCTCCGTTCCCAAATGGACACCTCATATGTACCAAGAAGCAACATAGAGGAGGCTATACTTCTTTTAATGATTCTGCTAAGGAAAACCTCTTTCAATAGAATTGAGTGGGATCCTTCAATTTTGGATCATCTCTTATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTCGCCAATCAATTGGAACAATTGCTTCCCTCCACTGTCAATCCAAGAGAAAAGTACTATATTCTTGCTCTCTGTTATCATGGAGCAGAACTTGAAAGGATGTCATCAGTTGATGTTTTAGCTTTGTTAATGACTTCCAAGATCTGTTGTGAGAACCCTAGTCTTGCTAGAGAAGGGGAAAGCTTTGGTTGCAGAGTGCTTGAGAACTTGAAAGGATGTCATCAGTTGGAAAGTCTTGCACACTGCTTACGTGGTCTTTCACTTTCAGCACATTCAACATCAGACATTTCTGATTCTGAGAGGCATAGGAGACAGTCTGATGCCCTTCACAACTTGGAAATTGCCTGCAGAACAGCCACAATGAGAAACCCCCTGATACTATACCATCTCAGTCTTGAATATGCTGAACACAGAAAGCTGGATGCTGCACTTGATTATGCTAAATGCTTTCTAGAACTGGAAGCAGGATCTAATGTTAAAGGGTGGTTATTATTAGCCAGGATATTATCAGCTCAAAATCGTTTTTTGGATGCTGAATCTATTATCAATGCTGCTTTGGACCAGACTGGGACATGGGATCAAGGAGATTTGTTGCGAACAAAAGCTAAACTTCAGATTGCACAGGGCCAGTTAAGGAGGGGCATGGAGACCTATACTCAGCTTCTTGCTGTTCTTCACGTTCAGAGTAAAAGTTTTGGTTCTGGGAAGAAGTTATATAAGGACACCAGAGATGATGCTCAGAACTTGGAAATGGAAATCTGGCATGATCTTGCTTTCTTATATACTAGCCTGTCAAAATGGCATGATGCAGAATTGTGTCTTTCAAAATCCAAGGCCATCAACCTATACTCTGCTTCTAGATGTCATGCAACAGGTCTTATAAACGAAGCAAAGGGCCTATATAAAGAGGCTCTAAAAGCTTATCGTGAGGCTTTGGTGATTGACCCCACCCATGTCCCAAGCTTAATCTCTTGTGCTGTGGTTCTCAGAAGGTGCAGTAAAGAATCAAATGCTATTGTCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATTCAGTGCTTCTGCTTGGTACCATCTTGGCCTTCTTCACAAGGCTGAGGGCACTGTATCCTCATTAGTAGAAGCCATGGAATGTTTCGAGGCAGCTCACTTTCTTGAAGAATCTACACCTGTTGAGCCTTTCAGATAA 2142 0.4169 MNCLCSGEQSRREENMVPSSGSIAIKGYSVNEVSCPASQIDKKPDTSNIEEAESSLRESGCLNYEVCNFHFVALVICNLREARALLGKYEYQKGNIEAALQVFERIDLGVVTSMIKNSLAKRVKRHKRHSENYVTPSLSIYAVGLMMEAVFLKAKSLQVLGRFKEAALSCKVILDIVESSLPQGLPENFGAECKLQETLSKAVELLPELWKLADCPHEAIMSYRWALLHKWNLDAVTAAKIQKEFVVLLLYSGAEASPPSLRSQMDTSYVPRSNIEEAILLLMILLRKTSFNRIEWDPSILDHLLFALSVSGDLTAFANQLEQLLPSTVNPREKYYILALCYHGAELERMSSVDVLALLMTSKICCENPSLAREGESFGCRVLENLKGCHQLESLAHCLRGLSLSAHSTSDISDSERHRRQSDALHNLEIACRTATMRNPLILYHLSLEYAEHRKLDAALDYAKCFLELEAGSNVKGWLLLARILSAQNRFLDAESIINAALDQTGTWDQGDLLRTKAKLQIAQGQLRRGMETYTQLLAVLHVQSKSFGSGKKLYKDTRDDAQNLEMEIWHDLAFLYTSLSKWHDAELCLSKSKAINLYSASRCHATGLINEAKGLYKEALKAYREALVIDPTHVPSLISCAVVLRRCSKESNAIVRSFLMDALRHDRFSASAWYHLGLLHKAEGTVSSLVEAMECFEAAHFLEESTPVEPFR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0828 713 Gene3D Tetratricopeptide repeat domain 45 556 IPR011990 GO:0005515
Dere02g0828 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Dere02g0828 713 SUPERFAMILY TPR-like 513 685 IPR011990 GO:0005515
Dere02g0828 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Dere02g0828 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Dere02g0828 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Dere02g0828 713 SMART tpr_5 147 180 IPR019734 GO:0005515
Dere02g0828 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Dere02g0828 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Dere02g0828 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Dere02g0828 713 Gene3D Tetratricopeptide repeat domain 557 708 IPR011990 GO:0005515
Dere02g0828 713 SUPERFAMILY TPR-like 438 540 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0828 Dere-ChrDere02 7814768 7818457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0828 1 713 Calmodulin-binding Proteins AT4G28600 52.097 0.0 671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0828 02 7814768 7818457 Dere01g3065 01 45172133 45177451 CCT