Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0818 ATGATTTCGAACGGCCGAGACCTGATCGAACCTAGAAGCAAGCAAGGGTTCTTGTGTTTGTTTTGTCTGTGGCAATCGAAATTGGAAGACGAGGACAGAATTTTGCTTAGTAGTTTGGGAGTAGAGTCTGCCAATCCCGAATGCATCGAAAGAGACGTATTAGCTGAGGCAACGAATGATGTGGTGACCAGTACTGAATTTGATGGGAGTTCAAAGGAGGAGTCTCATCATAAGTCTGAAAATGTTGATCCATCACCTACTAGCAAAGCAGAACTTTATCATAAGTTGAGGGCAGTAGATTTTGAAATAAATGCAGTTGCTTCCACTATCCAACAGGGGAGAAATGTTGGAAGCAATGGAGATTATAGTGGTGTTGCTGGTGACAGCCAGAAGCAAGGGATTACAGAGGATAATTCCTCCAATGATTTGAACCTTCAGCATGTTCTTGCTGCTGATAGGTTAAAAAGCCTGAAGAAGACAAAGGCTCAGCTAGAAAAAGAGCTTTCAGATTTGTTCAAGGAGAAGACTTCCAAGAGTGTTGATCAGGACGAAGTCATCTTTAATTTGGTTAAGGAAGATTTTAGATCCAAGAGGAAGCCTAAAGAAGTTCAAAAATTAAGTAAAAGCTCAGGAAAACGGCATAAAACAGTCTCATTTAATGATGATGTTGATTTTGATGCAGTTTTGGATGCTGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGACCAACTGGTGAGGAAAGGGATTTTAACCCCTTTTTCTAACCTGAAGGGCTTTGAGCGCCGCTTTCAACAATCTGAAACATGTACTAGCTACAATGCAAGTCGAGAAGAAAAAACTGATGATCTTGCTTCTTCTAGTGTTGATAGAGCTGCCAGGTCAATATCTGAGGCAGCAAGAGCTCGCCCGACCACCAAGCTACTTGAGTCTAAAGATCTGCCAAAGCTTGATGCACCCACTCATCCTTTTGTCAGACTCAGGGTACCGCTAAAACTTCCTCAATCTCAAGAAAGCGAGGTAGATAAGAAAAAAAATTCTAAAAGGCGAAAAAGGCGACCTTTGCCTGGTAGGAAATGGACAAAGCGTGTTTCTAGTGAGGACATACATTCAAGAGAGACTGTTGCTGCATGCTTTTCAGAAGATGCTAGTGGTTGCCTGGATACCTCCAGTAGTGAAAATTTAGAGGCCCAGGATGATGAACTTGCTGATCATGAACCTTCTTTTATAACATTAGAAGGCGGGCTGAAAATCCCTGATAATATTTTTGATGCACTGTTTGACTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAACTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACCATCCAGGTCTTATCGTTTCTTGGTGCATTGCATTTCAGTGGCATGTATAAACCAAGCATTATTATTTGTCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTCAAAAGTGGTACCCAAAATTTCTTGTGGAGCTTTTACATGATTCTGCTCAAGATCCTGCAGTTAGAAAGAAGCGATCCAGATGTGATGAAACAGACTATGATAGTAATAGTTCGATTGACAGTGATTATGAGAGGAATATACAATCAAAAAATACAAGAAAGTGGGAATCCTTGATAAATCGTGTCATGAGATCAGAGTCTGGATTGCTTATCACCACATATGAGCAGCTCAGAATATTGAGGGACCTGTTGCTTGACATTGAATGGGGTTATGCAATTCTTGATGAAGGGCACAGAATAAGGAATCCAAATGCTGAAATTACCCTAGTTTGCAAACAGCTACAGACTGTACACCGCATCATAATGACTGGTTCACCTATACAAAACAAATTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTCCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAGGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCTACAGCATACAGGTGTGCTGTAGTGCTACGTGATTTAATCATGCCTTATCTTCTCCGACGGATGAAGGCAGATGTGGATGCCCTACTTCCAAAGAAAACTGAGCATGTTTTGTTTTGTAGCCTTACAGCAGAGCAAGTATCTGCTTATAGAGCATTTTTGGCAAGCACTGAAGTTGAGCAAATCTTGGACGGACGCAAGAATTCTCTTTCTGGCATTGATGTAATGCGTAAGATTTGCAACCACCCTGACCTGCTTGAAAGGGAACATGCCTTCAGCGATCCAGATTATGGAAATCCAGAACGTAGTGGAAAAATGAAAGTAGTAGCACAGGTGCTTAATGCTTGGAAGGAACAGGGCCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTGGACATTATTGAGAATTTTTTGACAGCTGCTGGTCATAATTACCGGAGAATGGATGGAATCACTCCCATAAAACAAAGAATGGCTTTAATAGATGAATTTAATGCCTCAAGCGAAGTATTCATTTTCATTTTGACGACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAGACAGGGTGATCATCTTTGACCCTGATTGGAATCCATCAACTGACGTGCAGGCCAGAGAGCGTGCTTGGCGAATCGGTCAGACACGAGATGTGACAGTGTATAGGTTGATTACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAAATTTATAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAAAAAAGATTCTTCAAAGCTCGGGATATGAAGGATCTTTTCACTCTGAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAACTATTTTCAGTCAAATATCTGAAGATGTAAATGTTGTTGGGACACATGAAGATAAGCATGACAAGCGTAAACATCCCCAAACTGCTGAACTAGGTTCTGATGATGTTGCTGTTAATAATGATGGCAGATCAGAGGCAGGACCACTAAGGGGAAAGGGGAAAGAGAAAGCAGATCATCATGATAAAGTAGACGAGGAAACAAATATATTGAAAAGCCTTTTTGATGCCCACGGGTTACATAGTGCTGTGAACCATGATTTGATCATGAATGCTAATGACGAGGAAAAGATGAGGCTTGAGGAGCAAGCTTCCCAGGTTGCACAGAAAGCTGCAGAAGCTTTACGTCAGTCCCGAAAGCTCCGAAGTCATGACAGCATCGCTGTTCCTACATGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATGCCCAGTTGGTAAATAATTGCAAAGAATCTGGTGAATTGCCTAGCGATGGAACAAGAAAATTAAATGGATTTGCTGCTGGGACATCATCTGGTGAGGCATTATCTTCTGCTGAACTTTTGGGTCGAATCCGAGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTAGAACATCAGTTTGGTATGGCCTTAAACTCTTCTAGTCAATCGAGATCTATAGATGTTGGATCTTCTAGGGCTTCCAAAAAGTTATCTGGAGTGCAACCTGAGGTATTGATTCGGCAAATCTGTACATTTCTACAACAGAGAGGTGGTATGTCCAATTCTTCCAGCATAGTCCAGCATTTTAAGGACAGGATACCCTCAACGGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGGACAAAGGACCAAATGGATCACATTGGATTCTGAAGCCAGAATATCAAGAATAA 3771 0.4187 MISNGRDLIEPRSKQGFLCLFCLWQSKLEDEDRILLSSLGVESANPECIERDVLAEATNDVVTSTEFDGSSKEESHHKSENVDPSPTSKAELYHKLRAVDFEINAVASTIQQGRNVGSNGDYSGVAGDSQKQGITEDNSSNDLNLQHVLAADRLKSLKKTKAQLEKELSDLFKEKTSKSVDQDEVIFNLVKEDFRSKRKPKEVQKLSKSSGKRHKTVSFNDDVDFDAVLDAASAGFVETERDQLVRKGILTPFSNLKGFERRFQQSETCTSYNASREEKTDDLASSSVDRAARSISEAARARPTTKLLESKDLPKLDAPTHPFVRLRVPLKLPQSQESEVDKKKNSKRRKRRPLPGRKWTKRVSSEDIHSRETVAACFSEDASGCLDTSSSENLEAQDDELADHEPSFITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREAQKWYPKFLVELLHDSAQDPAVRKKRSRCDETDYDSNSSIDSDYERNIQSKNTRKWESLINRVMRSESGLLITTYEQLRILRDLLLDIEWGYAILDEGHRIRNPNAEITLVCKQLQTVHRIIMTGSPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVDALLPKKTEHVLFCSLTAEQVSAYRAFLASTEVEQILDGRKNSLSGIDVMRKICNHPDLLEREHAFSDPDYGNPERSGKMKVVAQVLNAWKEQGHRVLLFTQTQQMLDIIENFLTAAGHNYRRMDGITPIKQRMALIDEFNASSEVFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDVQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSTIFSQISEDVNVVGTHEDKHDKRKHPQTAELGSDDVAVNNDGRSEAGPLRGKGKEKADHHDKVDEETNILKSLFDAHGLHSAVNHDLIMNANDEEKMRLEEQASQVAQKAAEALRQSRKLRSHDSIAVPTWTGRSGTAGAPSSVRRKFGSTVNAQLVNNCKESGELPSDGTRKLNGFAAGTSSGEALSSAELLGRIRGNQEKAIGAGLEHQFGMALNSSSQSRSIDVGSSRASKKLSGVQPEVLIRQICTFLQQRGGMSNSSSIVQHFKDRIPSTDLALFKNLLKEIATLDKGPNGSHWILKPEYQE 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0818 1256 MobiDBLite consensus disorder prediction 964 979 - -
Dere02g0818 1256 MobiDBLite consensus disorder prediction 996 1011 - -
Dere02g0818 1256 CDD DEXHc_ERCC6 425 635 - -
Dere02g0818 1256 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 773 932 IPR001650 -
Dere02g0818 1256 PANTHER SNF2/RAD54 FAMILY MEMBER 190 1238 - -
Dere02g0818 1256 Pfam SNF2-related domain 428 750 IPR000330 GO:0005524|GO:0140658
Dere02g0818 1256 MobiDBLite consensus disorder prediction 114 139 - -
Dere02g0818 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 948 IPR027417 -
Dere02g0818 1256 Gene3D - 693 981 IPR027417 -
Dere02g0818 1256 CDD SF2_C_SNF 768 893 - -
Dere02g0818 1256 MobiDBLite consensus disorder prediction 964 1011 - -
Dere02g0818 1256 MobiDBLite consensus disorder prediction 62 88 - -
Dere02g0818 1256 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 437 636 IPR014001 -
Dere02g0818 1256 MobiDBLite consensus disorder prediction 267 314 - -
Dere02g0818 1256 FunFam Protein CHROMATIN REMODELING 8 403 685 - -
Dere02g0818 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 686 IPR027417 -
Dere02g0818 1256 Gene3D - 398 685 IPR038718 -
Dere02g0818 1256 MobiDBLite consensus disorder prediction 67 84 - -
Dere02g0818 1256 SMART ultradead3 421 644 IPR014001 -
Dere02g0818 1256 Coils Coil 147 174 - -
Dere02g0818 1256 Coils Coil 1038 1065 - -
Dere02g0818 1256 CDD CSB_WHD 1189 1255 - -
Dere02g0818 1256 Pfam Helicase conserved C-terminal domain 773 882 IPR001650 -
Dere02g0818 1256 FunFam DNA excision repair protein ERCC-6 693 971 - -
Dere02g0818 1256 SMART helicmild6 799 882 IPR001650 -
Dere02g0818 1256 MobiDBLite consensus disorder prediction 328 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0818 Dere-ChrDere02 7722253 7728936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0818 725 936 RAD5 or RAD16-like Gene Family AT5G22750 30.698 7.92e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere02g0818 SNF2_N 1.1e-59 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0818 02 7722253 7728936 Dere02g0818 02 7722253 7728936 ECH