Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0806 ATGCCATCTCTAATTTCTCCCGGGAAAATCCATCGCTTGGAGATGGAAAATTTCAAGTCTTACAAGGGTCTACAAGTAATTGGTCCTTTCTACGACTTCACCGCAATTATTGGTCCCAATGGTGCTGGCAAATCGAACCTTATGGACGCCATTAGCTTTGTGCTCGGTGTAAGGACGGGCCAGCTGCGTGGGGCTCAGCTCAAGGACTTAATCTACGCCTACGATGACAAGGAAAAAGAGCAGAAGGGACGGAGGGCATTCGTTCGTTTGGTTTATCAGTTGGGCAATGGGTCGGAGATACAATTCACTAGGACTATTACGAGCTCCGGCGGGAGCGAGTACCGTATTGATGGGAACGTTGTAACGTGGGATGTGTATAATGCTAGACTGAAGTCACTTGGTATTCTTGTCAAGGCTCGCAATTTCTTGGTGTTTCAGGGTGATGTGGAATCCATTGCATCCAAAAATCCAAAAGAGCTTACTGCCCTCCTTGAGCAGATATCTGGCTCTGATGAGCTCAAGAGAGACTATGAGCAATTTGAAGAAGAAAAAGCCAGAGCTGAAGAAAAATCAGCTCTTGTTTATCAGAAGAAGAAGACAGTAGTTATGGAGAGAAAGCAGAAGAAAGAACAAAAGGAAGAAGCAGAGAAACATCTTCGCTTGCAGGATCAACTGAGAACTATAAAGAAAGAGCATTTTTTGTGGCAGTTGTTCAACATAGAAAACGATATTGAAAAGACCTCTGATGATCTTGAGGATGAGAAAAGAAGTCGTGAAGGTGTCATGGAAGAACTAGAAAAATTTGAAGCTGAGGCTAGTAAGAAGAAGAAAGAACAGGCAAAATATCTGAAAGAGATTGCACAATGTGAAAGGAGAATTGGTGAGAGAAGCAACAAACTTGACAAGAATCAACCTGAACTTCTGAAGTTGAAGGAGGAAATAGCTCGTATTAACTCAAAAATTAAAAAAGGAAAGAAGGAGCTGGATAGAAAAAGAGAAGAACGGAGAAAACATGCTGGTGATATAACAGAGCTGCAGCGGGGTATACGAGATCTTACTGCAAAATTGGAAGATCTTCAGGAAAAGAGTCGAGATGTTGGTGATGAACTAAAGTTAGATGGCAGTGACCTGGAAGAATATTTTCGAATCAAAGAGGAAGCTGGGATGAAGACTGCAAAGCTTAGAGAGGAGAAGGAGCTTCTGGATAGGCAACAACATGCAGATAGTGAAGTTCAAAAAAATTTGGACGAAAATCTTCAACAGTTAAAGAATAGGGAGTCTGAATTGAATTTACAGGAAGAACAGATGCGAACAAGGCTGAAAAAAATTCTTGATAATTCTACAAAACATAAGGATGACCTTGCGAACTTGAAAAAAGAATTGCGTGTGATGCAGGACAAACATCGAGATTCTAGGAAAAAATATGAAAATTTAAAGTTAAAAATTGGTGAAATTGAAAATCAACTACGTGAATTGAAGGCTGATCGATATGAAAATGAGAGAGATGCAAGGCTTTCTCAAGCTGTGGAGAGTCTCAAACGCCTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTCGGCCAACACAGAAGAAGTATAACTTAGCTGTTACTGTTGCAATGGGTAAATTTATGGATGCAGTTGTAGTTGAGGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTGAAAGATCAGAGGCTTCCTCCTCAGACATTTATTCCTCTGCAATCAGTTCGTGTGAAGCCAATAATTGAAAGACTGCGCACGTTAGGTGGTTCAGCAAAGCTGGTTTTTGACTGCAAGTTTGATCCTGCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTAAGCTGGAGTGGGGAGAGGTTCAAGGTTGTAACTGTGGATGGAATTTTGCTGACAAAGTCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAGGCTAGGTCAAAACAGTGGGATGACAAAAAGATTGAAGGCTTGAAGAAAAAGAAAGAGCAGTATGAATCGGAGTTGGAAGAGGTAGGATCAATAAGAGATATGCACCTTAAGGAGTCTGAAGCATCTGGAAAAATTAGTGGACTTGAAAAGAAAATTCAATATGCTGAGATTGAGAAGCGAAGCATTGAAGACAAACTTTCAAATTTGAGGCGAGAAAAAGAGATAATCAAAGAAGAAATTGAACGTATCAGCCCAGAACTTCGGAAGTTAAATGATGCTGTTGATAAGAGGAATGCAGAAATACGTAAGCTGGAGAAGAGGATCAATGAAATAACTGATCGGATCTACAAAGATTTCAGCAAGTCGGTTGGGGTTGCTAACATCCGTGAGTATGAAGAAAATCAACTCAAGTCTGCTCAAAATGTAGCAGAAGAGAGGCTAAGCTTGAGTAGCCAGCTTTCAAAATTAAAATATCAATTGGAGTATGAGCAAAATCGGGATATGACTTCACGAATTAGAGAACTGGAGTCTTCTTTAAGTTCTCTAGAACATGATTTAAAACAGGTGCAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCTGAGAAAGCTACTGAAGATATTGATCGGTTGAAGGAAGAAGTTCAGGAGTGGAAATCAAAGTCAGAAGATTGTGAGAAGGATATCCAGGAATGGAAGAAGCGTGCCTCTTCAGCCACAACAAGCATATCTAAACTTAATCGTCAGATAAACTCTAAGGAGGCACAGATTGAGCAGTTGATGGTGCAGAAGCAGGAAATATTAGAAAAGTGTGAACTTGAACAGCTAAGCCTTCCGACTATATCAGATCCAATGGATACCAGTACTTCAACGCCAGGTCCAGTTTTTGACTTTGATCAGCTAAGTAGAACACTGAAGGATAGGAGGCAGCCTGACAGGGACAAAATTGAGGTTGAATTTAAGCAAAAGATGGATGCCCTGACATCTGAAATTGAAAGAACAGCACCGAATTTGAAGGCATTGGATCAATATGAGGCTCTGCTGGAAAAGGAAAGAGCTGTCACTGAAGAATTTGAAGCTGTCAGAAAAGAGGAGAAGGAGAAGACTGATAGGTTCAACACAGTTAAGCAGAAGAGGTATGAGTTGTTCATGGATGCTTTCAACCACATATCTGGTAATATTGATAAAATATACAAACAACTTACAAAAAGCAACACACATCCATTGGGCGGGACGGCATACTTAAACTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAGGTACACCGCTATGCCCCCAACAAAGCGCTTTCGTGACATGGAGCAGCTATCTGGTGGGGAGAAGACTGTTGCTGCACTTGCATTGCTGTTCTCAATCCACAGCTATAAACCTTCACCGTTTTTCATATTGGACGAAGTTGATGCTGCATTGGACAACTTAAATGTTGCCAAGGTTGCTGGATTTATTCGTTCCAAGTCTTGTGAAGGAGCAAGAGCTAGTCAGGATGCTGATGGTAGCAGTGGCTTTCAAAGCATTGTGATATCCTTGAAAGATAGCTTTTATGACAAAGCTGAAGCATTGGTTGGGGTTTACAGGGACTCAGAGAGAAGCTGTTCGAGAACTCTGACATTTGACCTGACCAAATACCGGGAGTCCTAA 3651 0.4125 MPSLISPGKIHRLEMENFKSYKGLQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAYDDKEKEQKGRRAFVRLVYQLGNGSEIQFTRTITSSGGSEYRIDGNVVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKARAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQDQLRTIKKEHFLWQLFNIENDIEKTSDDLEDEKRSREGVMEELEKFEAEASKKKKEQAKYLKEIAQCERRIGERSNKLDKNQPELLKLKEEIARINSKIKKGKKELDRKREERRKHAGDITELQRGIRDLTAKLEDLQEKSRDVGDELKLDGSDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEVQKNLDENLQQLKNRESELNLQEEQMRTRLKKILDNSTKHKDDLANLKKELRVMQDKHRDSRKKYENLKLKIGEIENQLRELKADRYENERDARLSQAVESLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIIERLRTLGGSAKLVFDCKFDPALEKAILFAVGNTLVCDDLEEAKVLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLKKKKEQYESELEEVGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLRREKEIIKEEIERISPELRKLNDAVDKRNAEIRKLEKRINEITDRIYKDFSKSVGVANIREYEENQLKSAQNVAEERLSLSSQLSKLKYQLEYEQNRDMTSRIRELESSLSSLEHDLKQVQNKEAEAKLAAEKATEDIDRLKEEVQEWKSKSEDCEKDIQEWKKRASSATTSISKLNRQINSKEAQIEQLMVQKQEILEKCELEQLSLPTISDPMDTSTSTPGPVFDFDQLSRTLKDRRQPDRDKIEVEFKQKMDALTSEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKTDRFNTVKQKRYELFMDAFNHISGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIRYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDADGSSGFQSIVISLKDSFYDKAEALVGVYRDSERSCSRTLTFDLTKYRES 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0806 1216 Gene3D - 495 577 - -
Dere02g0806 1216 Coils Coil 342 369 - -
Dere02g0806 1216 Coils Coil 1006 1026 - -
Dere02g0806 1216 Coils Coil 708 742 - -
Dere02g0806 1216 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Dere02g0806 1216 PIRSF SMC 8 1212 IPR024704 GO:0005524|GO:0016887
Dere02g0806 1216 SUPERFAMILY Smc hinge domain 481 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Dere02g0806 1216 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Dere02g0806 1216 Coils Coil 412 502 - -
Dere02g0806 1216 Coils Coil 828 932 - -
Dere02g0806 1216 Coils Coil 750 777 - -
Dere02g0806 1216 CDD ABC_SMC1_euk 1095 1210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Dere02g0806 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 272 IPR027417 -
Dere02g0806 1216 Coils Coil 674 694 - -
Dere02g0806 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1216 - -
Dere02g0806 1216 Pfam RecF/RecN/SMC N terminal domain 10 1198 IPR003395 -
Dere02g0806 1216 Gene3D - 8 215 IPR027417 -
Dere02g0806 1216 Gene3D - 944 1215 IPR027417 -
Dere02g0806 1216 Coils Coil 237 292 - -
Dere02g0806 1216 Coils Coil 307 334 - -
Dere02g0806 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 862 1207 IPR027417 -
Dere02g0806 1216 Gene3D - 578 659 - -
Dere02g0806 1216 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Dere02g0806 1216 Coils Coil 170 225 - -
Dere02g0806 1216 Pfam SMC proteins Flexible Hinge Domain 517 630 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0806 Dere-ChrDere02 7602930 7618442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0806 8 112 Structural Maintenance of Chromosomes family AT5G61460 35.714 7.43e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0806 02 7602930 7618442 Dere02g0806 02 7602930 7618442 ECH