Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0798 ATGGATTTAGATTCTCGCCTCTTCCAATTCCAAAACCAAGAACTGTCCCCTGCAAATTATAGCTCTGCTTCTGGAGAATCCTTCTCCTGGGATGACTTCTTCAGCTTCAACTTGGACGACTACTCATCCTCTTCCCAATCCAATTCTTGTTCTTTCGTGGGAGGAATTGAATCACAGGAAGTCTCCTCCCAGGTTGAAGAAACAAATGCATCGTCCCCGCCAAAGCATGAAAGCAGTAGTACGAAAGAGAAGAGGCCGTACAGAGGAGTGAGGAGGAGGCCATGGGGGAAATTCGCGGCGGAGATAAGAGACTCCACGAGGAATGGAGTTCGAGTGTGGATCGGAACATTCGACACAGCGGAGGCTGCAGCTTTGGCTTATGACCAAGCAGCTTACTGCATGAAGGGTTCGATGGCAGTGCTCAATTTCCCAGAACAAGTGGTGAGGGAGTCTCTGGAAAGCATGCCATGCAAGCCATGGGAAGATGGTTCGTCTCCTGTGTTGGCACTCAAGAGAAAGCACACCATGAGAATCAAATCCAGCTCCACACCTAACAAGAAGCCCAAAAGGGATTCCCAGAATGTGCTGGTGTTGGAGGATTTGGGTACTGAATATTTGGAGCAACTATTGGCCTTCACTTCCTCTGAATTCCATTCCTAG 660 0.4879 MDLDSRLFQFQNQELSPANYSSASGESFSWDDFFSFNLDDYSSSSQSNSCSFVGGIESQEVSSQVEETNASSPPKHESSSTKEKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAYCMKGSMAVLNFPEQVVRESLESMPCKPWEDGSSPVLALKRKHTMRIKSSSTPNKKPKRDSQNVLVLEDLGTEYLEQLLAFTSSEFHS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0798 219 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Dere02g0798 219 MobiDBLite consensus disorder prediction 61 76 - -
Dere02g0798 219 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Dere02g0798 219 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Dere02g0798 219 CDD AP2 87 146 IPR001471 GO:0003700|GO:0006355
Dere02g0798 219 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Dere02g0798 219 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Dere02g0798 219 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Dere02g0798 219 MobiDBLite consensus disorder prediction 61 90 - -
Dere02g0798 219 PANTHER DNA-BINDING DOMAIN 49 211 IPR044808 GO:0003700|GO:0009873
Dere02g0798 219 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Dere02g0798 219 FunFam Ethylene-responsive transcription factor 2 85 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0798 Dere-ChrDere02 7543712 7544371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0798 52 211 AP2-EREBP Transcription Factor Family AT3G23240 52.121 5.49e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g0798 AP2 1.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3123 01 45761024 45761695 Dere02g0798 02 7543712 7544371 CCT
Dere02g0798 02 7543712 7544371 Dere02g0798 02 7543712 7544371 ECH