Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0784 ATGGCTTCTGGGGCTGGGTCTGGGACTGGGTCGGGTTCTCCATGCGGCGCATGCAAGTTCCTCAGAAGAAAGTGCGCCACTGACTGCATATTTGCGCCTTACTTCTGCTCCGACCAAGGTCCTGCTAGATTTGCAGCCATTCATAAGGTGTTTGGGGCTAGCAATGTTTCCAAATTGCTCTTGCATATACCAGCTCGTGATCGTTGTGAGGCTGTCGTCACTATTGCTTATGAAGCCCAGGCTCGGATTAGGGACCCTGTTTATGGCTGCGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAGGCACAACTGATGCAAGTGAAGGCTCAACTGGCGCAGAAGAACCTAATGGAAAGCAGGAACTTTGAAATCCAGTGGGGAGGGAATAATATTGTTGCGAGTGAACAAGCAATGAATACATATAACATGAACCCTATATCTCCTCAGAGCTCGCTTGAGTCAGTTGACCACAGCATTATCAGCGATGGAATTAACATGCAAGATATACAAAGCAGAGAGGATTTCTCATTCCCTAGGAAAAGATCTTATAACAATGACTTGGGTGAGCTTCAACAACTTGCACTCAGGATGATGAGGAACTAG 615 0.4715 MASGAGSGTGSGSPCGACKFLRRKCATDCIFAPYFCSDQGPARFAAIHKVFGASNVSKLLLHIPARDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQKNLMESRNFEIQWGGNNIVASEQAMNTYNMNPISPQSSLESVDHSIISDGINMQDIQSREDFSFPRKRSYNNDLGELQQLALRMMRN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0784 204 Coils Coil 94 114 - -
Dere02g0784 204 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Dere02g0784 204 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Dere02g0784 204 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0784 Dere-ChrDere02 7388206 7389152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0784 2 204 AS2 family AT2G42430 53.498 5.36e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere02g0784 LOB 8.2e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3151 01 46123696 46133180 Dere02g0784 02 7388206 7389152 CCT