Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0781 ATGGAAGGAAACTATGTGAGAGGAGATCACAGGCATAGAGAGGAAAGCTTGAGCATTGAGGAGCATACATGGGGAAGCTCATGGCCAGCGAGAAACTACGCGTGTAGCTTTTGCAAGAGAGAGTTCAGGTCAGCTCAAGCTTTGGGTGGTCATATGAACGTTCACAGGAGAGATAGGGCTAGATTAAGATCAGGCATAACACCCTTATGGCTTAATTCTGAATCTCCAAAACCTAACCCTATAACCACTAAGCCTTCTAACCCAACTCCCTTATCTGCTCATGAGCTTTTCAATATTCATTACCCACATCGCTCTCCACTTTATACCCCTCATCTCACTTTGTCTTCTTCACCCTCCCATGCTTCTACCAGTGAAGATAAGAAACCACCAATGCTCATCGCGTCTTCTTCCAAGCTCCCTCTTTTGAGTCCTCAAAGCAGAGAAATTAAGGCGAATTGTGAAAACACAAGGAGTGCTTTTGGATCAATTAATGAGGAATTGAAGGGTTGTGCAAAGGAGAAAGGGCTTGAGGGTTTCAAGAATAATAAGGAGGATAACAATAATATCACGTTGGAGTTGGGGTTAGGGTTGCTTCAACACCCAAAGGAGCAAATAGATTTGGAGCTTCGACTCGGCCATTTCTAG 645 0.4419 MEGNYVRGDHRHREESLSIEEHTWGSSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSGITPLWLNSESPKPNPITTKPSNPTPLSAHELFNIHYPHRSPLYTPHLTLSSSPSHASTSEDKKPPMLIASSSKLPLLSPQSREIKANCENTRSAFGSINEELKGCAKEKGLEGFKNNKEDNNNITLELGLGLLQHPKEQIDLELRLGHF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0781 214 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Dere02g0781 214 MobiDBLite consensus disorder prediction 69 88 - -
Dere02g0781 214 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Dere02g0781 214 MobiDBLite consensus disorder prediction 110 131 - -
Dere02g0781 214 Pfam C2H2-type zinc finger 33 57 - -
Dere02g0781 214 SMART c2h2final6 33 55 IPR013087 -
Dere02g0781 214 Gene3D Classic Zinc Finger 13 66 - -
Dere02g0781 214 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Dere02g0781 214 PANTHER OS07G0101800 PROTEIN 13 213 - -
Dere02g0781 214 MobiDBLite consensus disorder prediction 110 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0781 Dere-ChrDere02 7367425 7368069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0781 21 212 C2H2 Transcription Factor Family AT3G23130 38.660 1.81e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g0781 zf-C2H2_6 5.8e-07 CL0361