Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g0780 | ATGGGGACTGAGGGTATTCCAGAAAACATTGTTGTTGGTTCTCACATTTGGGTTGGAGATCCAGAATTAGTCTGGATTGATGGAGAAGTACAGAAAATCAATGGAGCGGAAGCTGAGATTCAAACTAGTAATGGGAATATGGTGGTTGCCTATTTGTCAAAATTGTATCCCAAGGATACAGATGCTCCTACGGATGGAGTTGATGACATGACCAAGCTTTCATATCTGCATGAGCCAGCAGTGCTTCATAATTTAGCAACTAGATATAAGATCAATGAAATATATACTTATACTGGAAATATTCTTATTGCCATCAATCCCTTTCAAAGCCTTCCGCACTTGTATGGCACTGATGTGATGCAACGGTACAAGGGAGCAACACTTGGAGATTTAAGCCCTCATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTGATGAGGAGAAAAGCAATGCTATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTCATGCGTTATCTGGCATTTTTGGGTGGACACACTGCAGCTGAAGGATGTAGTGTTGAACAACAAGTTTTAGAATCAAACCCAGTTCTTGAAGCATTTGGCAATGCTAAAACTGTCAGAAATAGCAATTCCAGTCGTTTTGGAAAATTTGTTGAGATTCAATTTGATAATCATGGAAGAATATCTGGCACAGCCATTAGAACTTATCTCCTGGAGAAATCACGTGTTTGCCAAATTTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTACTCTGTGCAGCTCCACCTGAGGAAAAGGAGAGATATAAGTTAGGAGATCCTAAATCATTTCACTACCTTAATCAATCCAATTGCTATGAATTAGTTGGTGTTAATGCTACCCAAGAGTATCTGAACACAAAAAGAGCCATGGATATAGATGCAATTTTCAGAGTTGTGGCTGCTATACTTCATCTTGGAAACATTAAGTTTGGAAAATCAGAGGAAGATTCATCAGTTTTAGCAGATGAAGAATCCAAGTCCCATCTTGAAATGGCGGCAGAACTTCTCAAGTGTGTTCCAAGTGCATTGGAAGATGCACTCTGTAAGCGTATGATGATTACCCCTGAAGAAATCATTAAGAGAAGTCTTGATCCTCTTGGTGCAACAGTTAGTAGGGATGGTTTAGCCAAGACGTTATATTCTCGATTATTTGACTGGTTAGTCCAAAAAATTAATGTCTCCATTGGGCAGGATCCTAGCTCAAAATGCATAATTGGGGTTCTTGACATATATGGCTTTGAAAGCTTTGAAACTAATAGTTTTGAGCAATTTTGTATTAATTTCACAAATGAAAAGTTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAACAAGAGGAATATACGCGGGAAAGGATTGATTGGAGCTACTTAGAATTTATTGATAATCAAGATGTATTGGATCTTATCGAAAAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAGGCATGTATGTTTCCAAAGTCAACTCATGAAACGTTTTCACAAAAGCTTTATCAGACATTCAAAAATAACAAACGCTTTGTCAAGCCAAAATTGTCTCAATCAGGTTTTACCATCGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGAACAGTTTTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTGAGTTCTTCCAAATGTTCTTTTGTAGCAGGCCTTTTCCCCCCACTTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTGCTCGCTTTAAGCAACAATTACAACAATTGATGGATACGCTGAAATCCACAGAGCCCCACTATATTAGATGTGTGAAGCCTAATAATGAATTAAAACCTGCCATATTTGATAATATGAATGTCATCCAACAACTTCGTTCCGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTTCCAACTCACAGGACCTTTTCCGAATTTTTAAGTCGATTGGCTATTCTTGCTCCAGAGGTTCTCAAAGAAAACTCTGATGAGAAGGAATCATGTAAAAAGATTCTGCAGAAGATTGGCCTTACAGGTTATCAGATAGGGGAAACCCAGATATTCTTAAGAGCTGGTCAGATGGCTGAGTTAGATGCTCAAAGGGCACTCCTGCTTAGCAAGTCTGCTACAGTTATCCAGAAGCAGATCAAAACTCATCTGGCTCAGAGAAGATATCTTGCACTGCAAAAGTCTTCTGTCTGTGTGCAATCTCTTTGTAGAGGGGATATGGCTCGGAGATCATACTATCACATGAAGAGGAAGACAGCTGCTGTTAGAATTCAAAGGAACATTCGTGGAAAACTAGCCAGGAAAAAGTACAACCAAATATATATTTCTGTCATTGTATTGCAGGCAGGTCTCCGGGCAATGGCAGATCGTGCTGAATTGAGATATAGAAAACAAACTAGTGCATCAATCAAACTTCAGGTTGCAGAGAAAGCAGTGGAAATGGAAAAGCAGGGTGATGAGAGAGCAGTGGAAACAGAATGCCAGCTTTTGGAGAAAGCAGATGAAAACGAAAGCCCTTCCATTAAAGAATCATTTGATGATTGTGAAGATTCTGAAAGCATTGAAGTTATTGGGGAATCCTTAAGGTTTATGCAAGATGGTGAAAAGATCAAGGCTCTTACCGCAGAAGTAAAAAATTTAAAGGTTATGTTGCATGCAGAAAAACAAAGAGCTGATGAATGTGAAAGGAAATATGTAGAAGCCCAAGAATCTAGTGAAGAATTACACAAGAAGCTAGCAGAAACTGAAAAGAGAGTATATCAGCTTCAGGACTCGCTAAACAGGATGATATCTTCCATGTCAAGCCAAGTTGCGGAGCTGAAAATGATCTTAAGTACCTCATCAAGATTGAGTTCAACATTTCGGCCTATTGCCAGAGTTGACGTTACTTCCAGTAACTCTGATACTTCATCCACAGACTCTGATTTCACATTTCCAGCTCCTGCTTCCAATGCAGCAACTCCGTCTAGCCCCAACCCTAAAGCTTTTCAACTAGTAGTTCAGGATGTCTCTGCAGCAAATGGTTCGGGATCTGAAAGTGAAAAGGAGGGATCATTTGATGATTTCTTCTAG | 3153 | 0.3958 | MGTEGIPENIVVGSHIWVGDPELVWIDGEVQKINGAEAEIQTSNGNMVVAYLSKLYPKDTDAPTDGVDDMTKLSYLHEPAVLHNLATRYKINEIYTYTGNILIAINPFQSLPHLYGTDVMQRYKGATLGDLSPHVFAIAEAAYRAMIDEEKSNAILVSGESGAGKTETTKMLMRYLAFLGGHTAAEGCSVEQQVLESNPVLEAFGNAKTVRNSNSSRFGKFVEIQFDNHGRISGTAIRTYLLEKSRVCQISDPERNYHCFYLLCAAPPEEKERYKLGDPKSFHYLNQSNCYELVGVNATQEYLNTKRAMDIDAIFRVVAAILHLGNIKFGKSEEDSSVLADEESKSHLEMAAELLKCVPSALEDALCKRMMITPEEIIKRSLDPLGATVSRDGLAKTLYSRLFDWLVQKINVSIGQDPSSKCIIGVLDIYGFESFETNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTRERIDWSYLEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLYQTFKNNKRFVKPKLSQSGFTIVHYAGEVQYQSEQFLDKNKDYVVPEHQDMLSSSKCSFVAGLFPPLSEETAKSAKFSSIGARFKQQLQQLMDTLKSTEPHYIRCVKPNNELKPAIFDNMNVIQQLRSGGVLEAVRIKCAGFPTHRTFSEFLSRLAILAPEVLKENSDEKESCKKILQKIGLTGYQIGETQIFLRAGQMAELDAQRALLLSKSATVIQKQIKTHLAQRRYLALQKSSVCVQSLCRGDMARRSYYHMKRKTAAVRIQRNIRGKLARKKYNQIYISVIVLQAGLRAMADRAELRYRKQTSASIKLQVAEKAVEMEKQGDERAVETECQLLEKADENESPSIKESFDDCEDSESIEVIGESLRFMQDGEKIKALTAEVKNLKVMLHAEKQRADECERKYVEAQESSEELHKKLAETEKRVYQLQDSLNRMISSMSSQVAELKMILSTSSRLSSTFRPIARVDVTSSNSDTSSTDSDFTFPAPASNAATPSSPNPKAFQLVVQDVSAANGSGSESEKEGSFDDFF | 1050 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g0780 | 1050 | Gene3D | - | 660 | 727 | - | - | |
| Dere02g0780 | 1050 | CDD | MYSc_Myo11 | 79 | 714 | IPR036018 | - | |
| Dere02g0780 | 1050 | Gene3D | - | 255 | 311 | - | - | |
| Dere02g0780 | 1050 | Gene3D | - | 433 | 617 | - | - | |
| Dere02g0780 | 1050 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 42 | 777 | IPR027417 | - | |
| Dere02g0780 | 1050 | ProSiteProfiles | IQ motif profile. | 777 | 804 | IPR000048 | GO:0005515 | |
| Dere02g0780 | 1050 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 11 | 60 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | PANTHER | MYOSIN | 57 | 980 | - | - | |
| Dere02g0780 | 1050 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 595 | - | - | |
| Dere02g0780 | 1050 | Pfam | Myosin head (motor domain) | 67 | 714 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | MobiDBLite | consensus disorder prediction | 990 | 1022 | - | - | |
| Dere02g0780 | 1050 | Pfam | IQ calmodulin-binding motif | 731 | 749 | IPR000048 | GO:0005515 | |
| Dere02g0780 | 1050 | Pfam | IQ calmodulin-binding motif | 780 | 797 | IPR000048 | GO:0005515 | |
| Dere02g0780 | 1050 | ProSiteProfiles | Myosin motor domain profile. | 65 | 726 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | FunFam | Myosin heavy chain | 255 | 310 | - | - | |
| Dere02g0780 | 1050 | Coils | Coil | 897 | 952 | - | - | |
| Dere02g0780 | 1050 | SMART | MYSc_2a | 59 | 727 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | Gene3D | Kinesin motor domain | 68 | 656 | IPR036961 | - | |
| Dere02g0780 | 1050 | ProSiteProfiles | IQ motif profile. | 752 | 781 | IPR000048 | GO:0005515 | |
| Dere02g0780 | 1050 | Pfam | Myosin N-terminal SH3-like domain | 13 | 49 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | Gene3D | - | 729 | 778 | - | - | |
| Dere02g0780 | 1050 | Gene3D | - | 779 | 830 | - | - | |
| Dere02g0780 | 1050 | PRINTS | Myosin heavy chain signature | 152 | 177 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | PRINTS | Myosin heavy chain signature | 199 | 226 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | PRINTS | Myosin heavy chain signature | 95 | 114 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | PRINTS | Myosin heavy chain signature | 476 | 504 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | PRINTS | Myosin heavy chain signature | 423 | 451 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Dere02g0780 | 1050 | FunFam | Class V myosin | 433 | 576 | - | - | |
| Dere02g0780 | 1050 | SMART | iq_5 | 776 | 798 | IPR000048 | GO:0005515 | |
| Dere02g0780 | 1050 | SMART | iq_5 | 728 | 750 | IPR000048 | GO:0005515 | |
| Dere02g0780 | 1050 | SMART | iq_5 | 751 | 773 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g0780 | Dere-ChrDere02 | 7332612 | 7364247 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g0780 | 5 | 1001 | Myosins gene family | AT1G08730 | 61.858 | 0.0 | 1291 |