Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0764 ATGGCGACGGAAGAACCCACCGTGGCCGTAGAAACCGCACCAGAATCAGCTGCTGTTGAGCCAGCAGAGGAGAAAGTGACCACCAAGGCTGGTGGTAAGACGAAGAAAGCTAGGGAGCCAAAACCCAAAAAAGCTGCTGCTCCTAAATCCCGGAACCCTCCAACTCATCCTCCGTATGAAGAGATGATTAAGGACGCGATTGTTACGTTGAAGGAGAGGACTGGTTCGAGCCAGTATGCGATTACCAAGTTTATCGAAGAGAAACACAAGCAACTTCCTGCCAACTTCAGGAAGCTTGTGTTAACCCAGTCGAAGAAGCTTGTGGCTTCTGGAAAGCTTGTCAAGGTCAAGGGTTCTTTTAAGCTTCCTTCTGCCAAGTTGTCGGCACCAAAGCCGTCTGGGACTTCTGTTCCGGCAAAGAAGAAGCCTGCAGCTGTTAAACCCAAAGCTAAACCAGCTTCCAAGCCAAAGGAGACGAAGACAACCAAGGCGGCATCTAAAGCGCCTGCTAAGTCCAAGGCAGTTGCCAAGGCAAAGCCTAAAGCGGCTGCTAAGTCGAAGGTTGGCACGAAGCCCAAAGCTGCTCCGGCAAAGCCCAAAGCCGCTGCCTCGAAGCCAAAAACTGCCGCTAAGCCGAAGGCTGCTGCAAGACCGAAGCCCAAGGAGAGACCGGCCAAGGCTTTGAGGACATCGACCAGGACGTCTCCGGGGAAGAAAGCTCCTGCTCCGAAGCCGACACCAAAGAAGGCTGCCGCTCCCAAGAAAGCAACTGCTAAAAGCGTTAAGCCTAAGAGTGTCAAGTCTCCTGCAAAGAAGGCTTCGACTAGGAGAGGAAGGAAGTGA 843 0.5279 MATEEPTVAVETAPESAAVEPAEEKVTTKAGGKTKKAREPKPKKAAAPKSRNPPTHPPYEEMIKDAIVTLKERTGSSQYAITKFIEEKHKQLPANFRKLVLTQSKKLVASGKLVKVKGSFKLPSAKLSAPKPSGTSVPAKKKPAAVKPKAKPASKPKETKTTKAASKAPAKSKAVAKAKPKAAAKSKVGTKPKAAPAKPKAAASKPKTAAKPKAAARPKPKERPAKALRTSTRTSPGKKAPAPKPTPKKAAAPKKATAKSVKPKSVKSPAKKASTRRGRK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0764 280 PANTHER HISTONE H1 34 255 - -
Dere02g0764 280 CDD H15 53 132 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g0764 280 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere02g0764 280 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere02g0764 280 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere02g0764 280 PRINTS Histone H5 signature 151 165 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dere02g0764 280 MobiDBLite consensus disorder prediction 1 61 - -
Dere02g0764 280 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g0764 280 MobiDBLite consensus disorder prediction 119 280 - -
Dere02g0764 280 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g0764 280 FunFam Histone H1 50 135 - -
Dere02g0764 280 Gene3D - 50 151 IPR036388 -
Dere02g0764 280 MobiDBLite consensus disorder prediction 265 280 - -
Dere02g0764 280 SUPERFAMILY "Winged helix" DNA-binding domain 52 132 IPR036390 -
Dere02g0764 280 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere02g0764 280 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0764 Dere-ChrDere02 7169957 7170898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0764 57 132 Single Myb Histone (SMH) Gene Family AT1G72740 35.443 8.03e-09 53.5