Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0757 ATGATACGTGGGTGGGCTGGAAGGGATTGGGCTGAGAGCGAAACGATGGCGAATCAGGTGGTGAAAGTGAAGAGGGAAGCGATTGTAGCATGCATGACCTGCCCACTCTGCAATAAGTTGTTCAGAGACGCCACCACCATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGTATCTATGATAAAATTACAGATGAGGAATTAGAATGTTGTCCAATATGCAATATTGATTTGGGTTGTGTTCCACTCGAGAAATTGAGGCCAGACCACAATTTGCAAGATGTAAGGGCTAAAATTTTCCCTCTGAAGAGAAGAATGGCAAAAGCACCTGAGGTTGTTCCCTCAGTAACATTACCAGCTAGAAGAAAGGAGAGATCGCTTTCATCATTGGTTGTTAGCACTCCCAGAGTATCAACACAGGCAACCATGACAGGGAGAAGAACAAAACCTGCAAGAAAGCCTAGTGGTCTGCGAGCCTCTAGTTTTTCTGTTGAAAAGCCAATTAAAAAAGAAGATTTATTGGAAGATCATCCAGAGAGTTCAAGCTCGCCTGACACTGTGAACAAGTTCACTCAGAATACTGGACAGAGTTTATACCCTCTTGAGTTTAGCCAGACCGTACACAAGAAAGAATCAGATATGGGTGCTGAACCATGGGAAGCAAGAAAGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAAGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAATGTGCAGGGGTCTGAAGCTAAACTAGAAACCATGCAAATAAATGAGAGTGACACTCAAGTGCAAAAATCCAAAAATAAGTGCAAGGCAAAAGTTGAGAATGAAAAAATTGGCAATGATCCTGTTTCTTTAAATACAGCAAAATCTAATAAATCACGCAAAGTTCGCCGAAAAAGGGAACCTCTTTTTGGAGAACCAGGCATATCACCTCAAGCTGTGCTGGATGCAACCAGTGCTAAATTCAAAAAGAGAACTGCTCCAATTTGGTTTGCCTTAGTAGCTTCTGAAGATCAGGAAGGAGATGCACCCTTGCCCCAAATTCCTGCAAGTTATGTAAGAATAAAGGATGGAAGTTTACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTAGATCTGACTAGTGAAACAGAGGTTGAGATTAAATGCATGGGGCAACCAGTGGTCCCTACGCTGCAACTATGTAGTTTGGTTGACTTGTGGCTGCAAACAGCATCCTCAGCACAGCGAATTCCAGCAACGATTGGGTCCTCAGCGAAGGATTTTGTTATGGTCCTAGCCTATGCCCGCAAGGTCCCACACCCTTGA 1323 0.4255 MIRGWAGRDWAESETMANQVVKVKREAIVACMTCPLCNKLFRDATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHNLQDVRAKIFPLKRRMAKAPEVVPSVTLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPARKPSGLRASSFSVEKPIKKEDLLEDHPESSSSPDTVNKFTQNTGQSLYPLEFSQTVHKKESDMGAEPWEARKDLWKPLNCLVEVASRSKSFKSNVQGSEAKLETMQINESDTQVQKSKNKCKAKVENEKIGNDPVSLNTAKSNKSRKVRRKREPLFGEPGISPQAVLDATSAKFKKRTAPIWFALVASEDQEGDAPLPQIPASYVRIKDGSLPVSFIQKYLMKKLDLTSETEVEIKCMGQPVVPTLQLCSLVDLWLQTASSAQRIPATIGSSAKDFVMVLAYARKVPHP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0757 440 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Dere02g0757 440 CDD RING-HC_PCGF 32 75 - -
Dere02g0757 440 MobiDBLite consensus disorder prediction 129 162 - -
Dere02g0757 440 MobiDBLite consensus disorder prediction 129 146 - -
Dere02g0757 440 SUPERFAMILY RING/U-box 28 98 - -
Dere02g0757 440 SMART ring_2 34 74 IPR001841 -
Dere02g0757 440 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 16 436 IPR044807 GO:0004842
Dere02g0757 440 Pfam Zinc finger, C3HC4 type (RING finger) 34 74 - -
Dere02g0757 440 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Dere02g0757 440 MobiDBLite consensus disorder prediction 167 186 - -
Dere02g0757 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 118 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0757 Dere-ChrDere02 7109121 7114865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0757 17 359 C3H Transcription Factor Family AT2G30580 52.770 1.09e-112 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3182 01 46546390 46552499 Dere02g0757 02 7109121 7114865 CCT