Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0748 ATGTCATGTAGCTACTGGCTACAATCTATTCCCATTTCGCTCTCTCTCATTGATTGCTTTGCATCCACCCCACATGGTCGTGCCCATCCAATCAACAACATCCACGTGGGACGTGCTCCGTGTCCACATGGGCGTGTCCCTATGCGTGACACTCGTGATCCAACGCTCCTAGATTCACTCCGCAAATTCCACAAACCAGATATCAGCCGTCCATCTCTCTCTGTGCTAAGGACTCACATAGAAATCAGAATTCAAGAAATGGAGAATTCAATATTAAAGGGTGAGCTCAATCTTAAGGACACAGAGCTAAGGTTGGGATTGCCCGGCAGCGAGGAGCCGGAGAAACGTTGCAGTGTTATAAGCAAAAAGAGATGTTCGCCTGAGGAAACAAGTAGTGATGAGGAGTCAATGGGCACGAGTAGTGATGCCACAAGTGATCTTGACCACTTAGACAATAACCCACCTGCAAAGGTACAAGTAGTGGGATGGCCACCAATCCCATGTTTCAGGAAGAACAGTGTCCAACAAAAGATGTGGGAAGAGGGTGGGATGTATGTGAAAGTGAGCATGGCTGGTGCACCATACTTGAGGAAGACAGATCTCAAGGTTTATAAGAGCTACCCACAACTCCTCAAGGCCTTGGAAAATATGTTCAAGTGCACTTTCGGTGAGTATTCGGAAAGAGAGGGCTACAATGGATCTGAATATGTTCCTACATATGAAGATAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGAGATGTTCATGTGCTCCTGCATGAGGCTCAGAATCATGAAAGGATCAGAAGCTAAGGGGTTGGGTTGTTTATGA 840 0.4667 MSCSYWLQSIPISLSLIDCFASTPHGRAHPINNIHVGRAPCPHGRVPMRDTRDPTLLDSLRKFHKPDISRPSLSVLRTHIEIRIQEMENSILKGELNLKDTELRLGLPGSEEPEKRCSVISKKRCSPEETSSDEESMGTSSDATSDLDHLDNNPPAKVQVVGWPPIPCFRKNSVQQKMWEEGGMYVKVSMAGAPYLRKTDLKVYKSYPQLLKALENMFKCTFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWEMFMCSCMRLRIMKGSEAKGLGCL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0748 279 ProSiteProfiles PB1 domain profile. 183 270 IPR000270 GO:0005515
Dere02g0748 279 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 96 274 IPR003311 GO:0005634|GO:0006355
Dere02g0748 279 MobiDBLite consensus disorder prediction 106 156 - -
Dere02g0748 279 Pfam AUX/IAA family 120 277 IPR033389 -
Dere02g0748 279 FunFam Auxin-responsive protein 178 279 - -
Dere02g0748 279 MobiDBLite consensus disorder prediction 132 148 - -
Dere02g0748 279 Coils Coil 84 104 - -
Dere02g0748 279 MobiDBLite consensus disorder prediction 106 131 - -
Dere02g0748 279 Gene3D - 178 279 - -
Dere02g0748 279 SUPERFAMILY CAD & PB1 domains 177 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0748 Dere-ChrDere02 7009435 7010883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0748 175 276 B3 DNA Binding Superfamily AT2G46530 34.314 7.95e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere02g0748 AUX_IAA 7.6e-51 CL0072