Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0726 ATGTCTGGTCATGGCCCGTCGCTCTCGGATTTCACTACTTTCTTCCCACTGGTCTCTGCCAAAAAAAGGTGGCGTTTTGCTTATACTGTAATTTTTTCTAGGCGGGTCATGCTTTCCCTTGCCATTGAAGTGATATCTAGAAGAAGTAGCCAGCAATACCCTAAACTCTTTCTTGCTCACACTTCCACTAGTGGCCTTGATCTTATTGAACCCCACTCTTCCCAACACGTGTGCAATGAAGTTAAAATTCACAGTCCTTTTGTCTTCGTCGTTGATCAACCCAGACTCACAGAAATGGTGAAAAGCAAAAACGTTGAAGCACTTGCTGTGCTCGGAGGAGTGGAAGGCATTGCCTCTGCTCTTGAAGAAACTTTTCACAAGCGTGAGGAGAAAGTAAAGCAAATCCTGAGAGAAGATGGGTTGACCTTGTTAGGAATTGTTGGTCTCAAGGATCCATGCCGACCAGATGCCAAGAAGGCGGTGGAAACTTGCAGAGCTGCAGGAGTGGATGTCAAGATGATCACTGGAGATAACATATTCACAGCAAAGGCTATAGCAACAGAATGTGGAATACTAGATCTTGGTAACCAAGTAAATGCCGGAGAGGTGGTGGAAGGCATGGAATTCCGAAACTACACAGAAGAAGAAAGAATGCAGAAGGTAGAGAAGATCCGTGTGATGGCAAGATCATCCCCTTTGGACAAACATTTGATGGTACAATGCTTAAAGAAGAAAGGCCATGTAGTTGCAGTCACTGGAGATGGCACAAACGACGCACCTGCTCTAAAAGAAGCTGATATTGGACTCTCTATGGGCATCCAAGGCACTGAGGTTGCAAAGGAAAGCTCTGACATTGTTATCTTGGATGATGACTTCAGTTCCGTTACTACTATTTTAAGGTGGGGACGATGTGTTTATAATAACGTCCAGAAATTCCTCCAGTTTCAACTAACAGTTAATGTTGCAGCTCTGGTGATTAATTTTATAGCAGCAGTTTCTACTGGAGACGTTCCCTTAACAATAGTGCAACTACTATGGATCAACCTCATTATGGACACACTAGGTGCTCTGGCTCTAGCTACAGAGCGCCCTACTGATGAGCTAATGCAGAGAAAGCCAGTTGGTAGAACTGAGCCACTTATTGCCAACATTATGTGGAGAAACCTCTTATCACAAGCTTTATATCAGATAGCTGTGCTCTTGGTTTTACAATTCAAGGGAAAGTCAATCTTCAACGTAAGTGATGAGGTAATGAATACTATTATCTTTAATAGTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAATGCGAGGAGCATGGAGAAACATAATGTGTTCAAGGATATTCACAAGAACCACTTGTTTCTTGGAATTGTGGGGATTACTATTGTTCTCCAAGTAGTGATGGTAGAATTCCTCAACAAGTTTGCTGATACAGAGAGGTTAACGTGGAAGCAATGGGGAGCTTGTGTTGTTATTGCGGCTGTGTCATGGCCAATTGATTGGTTTGTGAAGTTAATACCAGTTTCAGACAAATCTCTTTTTAGGTATTTCAAGTTACACTGA 1566 0.4259 MSGHGPSLSDFTTFFPLVSAKKRWRFAYTVIFSRRVMLSLAIEVISRRSSQQYPKLFLAHTSTSGLDLIEPHSSQHVCNEVKIHSPFVFVVDQPRLTEMVKSKNVEALAVLGGVEGIASALEETFHKREEKVKQILREDGLTLLGIVGLKDPCRPDAKKAVETCRAAGVDVKMITGDNIFTAKAIATECGILDLGNQVNAGEVVEGMEFRNYTEEERMQKVEKIRVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDDFSSVTTILRWGRCVYNNVQKFLQFQLTVNVAALVINFIAAVSTGDVPLTIVQLLWINLIMDTLGALALATERPTDELMQRKPVGRTEPLIANIMWRNLLSQALYQIAVLLVLQFKGKSIFNVSDEVMNTIIFNSFVLCQVFNEFNARSMEKHNVFKDIHKNHLFLGIVGITIVLQVVMVEFLNKFADTERLTWKQWGACVVIAAVSWPIDWFVKLIPVSDKSLFRYFKLH 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0726 521 Gene3D - 298 507 - -
Dere02g0726 521 PRINTS H+-transporting ATPase (proton pump) signature 284 309 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere02g0726 521 PRINTS H+-transporting ATPase (proton pump) signature 252 268 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere02g0726 521 SUPERFAMILY HAD-like 93 357 IPR036412 -
Dere02g0726 521 NCBIfam HAD-IC family P-type ATPase 222 332 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Dere02g0726 521 PRINTS P-type cation-transporting ATPase superfamily signature 167 177 - -
Dere02g0726 521 PRINTS P-type cation-transporting ATPase superfamily signature 276 288 - -
Dere02g0726 521 PRINTS P-type cation-transporting ATPase superfamily signature 252 271 - -
Dere02g0726 521 PRINTS P-type cation-transporting ATPase superfamily signature 145 156 - -
Dere02g0726 521 PANTHER CATION TRANSPORTING ATPASE 117 510 - -
Dere02g0726 521 NCBIfam calcium-translocating P-type ATPase, PMCA-type 130 509 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Dere02g0726 521 SUPERFAMILY Calcium ATPase, transmembrane domain M 302 509 IPR023298 -
Dere02g0726 521 Gene3D - 120 152 IPR023299 GO:0000166
Dere02g0726 521 Pfam haloacid dehalogenase-like hydrolase 141 266 - -
Dere02g0726 521 Gene3D - 153 297 IPR023214 -
Dere02g0726 521 Pfam Cation transporting ATPase, C-terminus 337 507 IPR006068 -
Dere02g0726 521 FunFam Calcium-transporting ATPase 147 297 - -
Dere02g0726 521 FunFam Calcium-transporting ATPase 269 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0726 Dere-ChrDere02 6838007 6841102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0726 135 519 Primary Pumps ATPases AT3G63380 76.623 0.0 630