Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0722 ATGTTTTCTGCAGCCATGTCCAATTCCACTTCTTTGTCCGAAGAAGCCACTGTCTCTTCTGGTACTAGAGTCAAGAACTTCACTGCATTAAATCACGTCGTTTCAACCATTCCTCCTCAGCAGCCTCAAAAGATAAAGAAAAAAAGAAACCTCCCTGGAAATCCAGACCCAGATGCCGAAGTGATTGCGTTATCTCCAAAGACTCTTCTGGCCACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAGCTACATAGGAGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAAAAGAAAGTCTACGTTTGCCCTGAGCCTTCATGCGTTCACCACAATCCCTCGAGGGCTCTTGGTGATCTTACAGGTATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTCACAAGTGCTCCAAAATCTACGCTGTTCAGTCAGATTGGAGAGCTCACTCCAAAACCTGCGGAACCAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACTCATCGGGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTCAGAGCGAATCAATTAGCTACCACAAACCCATTATTCCAATCTCTCTTCCCTTTCCAAAATCAGATCTTGATGAATCCCTGGGACCCATCACAAGAAAACCCTAACCCTAGCAACCTTGATGCCCTCCAAATCAAGCCTGAAGCTCAGAGTTTTCAGACCCCCATCCTCTCCTCTCCGCCATTTCTTCAAGAGCAGCAGCTCAACTCACCCTTGGGAACCCTCCAAGTGCCCTCAAACGCCGCCACGTCAGCCTACCTGTCGGCCACTGCGCTCCTCCAAAAGGCTGCAACTGTCGGTGCCACTGCTATCACAGGCCCAGGTGCCGCTGGTGCTACTGCTGCAGGTGTTGGGGTTCAGTCAACAATGGGTCACGTGACTCAGCCAAGCATGGCCGAGTTTGGACCTGTGACTCAGGTCAACTCGGTGGGTCACGACTACATGAGAGGGCTCGTGACCCGGAATCCTAAGGATGAATGTCTGACCAGGGACTTCCTCGGTCTGACGGCCGATGTGAACGGCGGAAGAAATGGTGGCGCCGTTCACGTTAGCATGAACGCGAAGGATCTGCTGATCTTCACGGGGGGCGTAGAGTACCTACCATGCGACCATCATCATCACTCGCTCTTCAAGTCCCAACAAGGTTTCGGATTCGTTGGGACTGCCACTGCCCCGGAGACTTGGGGGAATTCTTGA 1320 0.5008 MFSAAMSNSTSLSEEATVSSGTRVKNFTALNHVVSTIPPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCHKCSKIYAVQSDWRAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLRANQLATTNPLFQSLFPFQNQILMNPWDPSQENPNPSNLDALQIKPEAQSFQTPILSSPPFLQEQQLNSPLGTLQVPSNAATSAYLSATALLQKAATVGATAITGPGAAGATAAGVGVQSTMGHVTQPSMAEFGPVTQVNSVGHDYMRGLVTRNPKDECLTRDFLGLTADVNGGRNGGAVHVSMNAKDLLIFTGGVEYLPCDHHHHSLFKSQQGFGFVGTATAPETWGNS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0722 439 Gene3D Classic Zinc Finger 109 199 - -
Dere02g0722 439 MobiDBLite consensus disorder prediction 32 59 - -
Dere02g0722 439 FunFam protein indeterminate-domain 12-like 54 122 - -
Dere02g0722 439 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Dere02g0722 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Dere02g0722 439 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 384 IPR031140 -
Dere02g0722 439 SMART c2h2final6 75 97 IPR013087 -
Dere02g0722 439 SMART c2h2final6 116 146 IPR013087 -
Dere02g0722 439 SMART c2h2final6 151 171 IPR013087 -
Dere02g0722 439 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Dere02g0722 439 Gene3D Classic Zinc Finger 71 98 - -
Dere02g0722 439 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Dere02g0722 439 Pfam Zinc finger, C2H2 type 75 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0722 Dere-ChrDere02 6742459 6745138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0722 15 428 IDZ Gene Family AT4G02670 51.282 9.08e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g0722 zf-C2H2 0.0043 CL0361