LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g0720	ATGAATCACCTGTATCCAGTGAAAGAAGAGTACTTGGAAGCTTCTTCATCTCAATTAGGAAGTGAAGCATCGACAATTCTCCCTCCGCAGCCAATGGAGGGGCTCCATGAGGTAGGGCCACCACCATTTCTGACCAAGACGTTCGATGTCGTGGACGACTTAACCATCAATTACATAGTTTCGTGGAGCAGAGGTGGCACTAGCTTTGTCGTTTGGGATCCACATGCCTTCTCCACGAGTATCCTTCCCAGATACTTTAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTGAATACTTATGGATTTAGGAAAATTGATCCAGATAGATGGGAGTTTGCGAATGAAGGATTCCTGAGAGGTCACAGGCATCTTTTGAGGAACATAAGGAGAAGGAAGACACCTTCTAATCTAAGTGTTTCCCAACAAGCACAACAAGGTCATTGTGTTGAAGTGGGTAGGTTTGGACTCGACGAAGAAATTGACCGTTTAAGGCGAGACAAGCAGGTGTTAATGATGGAGCTGGTGAAGCTTAGGCAGCAGCAGCAGAACACTAGAGCATACCTTCAGGCAATGGAGAAAAGGTTACGAGGCACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTAGCCAGAGCTATGAAAAATCCAGTCTTTCTCCAACAACTACTCCAGCAGAAAGACAAGAGAAAGGAGCTGGAAGAAGCCATTACTAAGAAGAGAAGAAGGCCGATTGAGCAAGGACCAAGTGGTGTCGGTGAATCAAGCAGTGGAGGTGGAGGAATGAGCCCTACCAAAGCTGAGCCTCTGGAAATTAGGGACTATGGGTTTGAAGTGTCAGAGCTGGAAGTGCTAGCTATGGAAATGCAGGGTTATGGTAGTGGAAGAAGCGAACAGGAGGCGCCAGGAGAACCACAGGAGAGGCTGGACAAAGAACTTGATGAGGGGTTCTGGGAAGAACTGTTTAGTGAAAAATTTGAGGGTGAATTGGACATTCCAAGCACTGAAGGTGAAGATGAAGATGCCAACATCTTGGCCAATCACTTAGGCTACTTGGGTTCAAGTCCTAAGTAA	1074	0.46	MNHLYPVKEEYLEASSSQLGSEASTILPPQPMEGLHEVGPPPFLTKTFDVVDDLTINYIVSWSRGGTSFVVWDPHAFSTSILPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLRNIRRRKTPSNLSVSQQAQQGHCVEVGRFGLDEEIDRLRRDKQVLMMELVKLRQQQQNTRAYLQAMEKRLRGTEMKQQQMMAFLARAMKNPVFLQQLLQQKDKRKELEEAITKKRRRPIEQGPSGVGESSSGGGGMSPTKAEPLEIRDYGFEVSELEVLAMEMQGYGSGRSEQEAPGEPQERLDKELDEGFWEELFSEKFEGELDIPSTEGEDEDANILANHLGYLGSSPK	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g0720	357	ProSitePatterns	HSF-type DNA-binding domain signature.	82	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere02g0720	357	MobiDBLite	consensus disorder prediction	288	314	-	-
	Dere02g0720	357	Pfam	HSF-type DNA-binding	43	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere02g0720	357	FunFam	Heat shock transcription factor 1	36	133	-	-
	Dere02g0720	357	SUPERFAMILY	"Winged helix" DNA-binding domain	39	132	IPR036390	-
	Dere02g0720	357	SMART	hsfneu3	39	132	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere02g0720	357	Coils	Coil	161	195	-	-
	Dere02g0720	357	PRINTS	Heat shock factor (HSF) domain signature	94	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere02g0720	357	PRINTS	Heat shock factor (HSF) domain signature	43	66	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere02g0720	357	PRINTS	Heat shock factor (HSF) domain signature	81	93	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Dere02g0720	357	MobiDBLite	consensus disorder prediction	237	267	-	-
	Dere02g0720	357	Coils	Coil	223	243	-	-
	Dere02g0720	357	Gene3D	-	36	133	IPR036388	-
	Dere02g0720	357	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	29	254	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g0720	Dere-ChrDere02	6732897	6734779	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g0720	21	355	HSF	AT3G22830	53.261	1.01e-130	378

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Dere02g0720		HSF_DNA-bind	2.9e-31	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere01g3213	01	46908519	46909656	Dere02g0720	02	6732897	6734779	CCT