Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0675 ATGGCTGCGCCACAAAGTAGCAGGCTCCAAGGCATGCTGCAAGCTGCGGTGCAAGCGGTTCAATGGACTTATAGTCTCTTTTGGCAACCTTGTCCACAACAAGGGATTCTGGTGTGGGCGGATGGGTACTACAATGGGGCAATTAAGACTCGCAAAACAGTGCAACCAATGGAGGTTAGCACCGAGGAAGCGTCTCTCCAAAGAAGCCAGCAACTTAGGGAGCTCTATGATTCATTGTCTGCCGGAGAGACCAATCCACCCACACGACGGCCTTGTGCTGCCTTGTCGCCCGAGGACCTCACCGAATCCGAATGGTTCTATTTGATGTGTGTCTCTTTCTCCTTTCCTCCTGGGGTCGGGTTACCGGGAAAGGCTTACGCTAGGAGGCAGCATGTATGGCTCGCTGGTGCAAACGAGGTAGACAGCAAGACATTTTCTAGAGCTATTCTTGCCAAGAGTGCTCGCATACAGACCGTGGTGTGCATTCCTCTGTTGGACGGCGTCGTAGAGTTGGGCACAACAGATAAGGTTCAAGAAGACCATAATTTTATCCAACATGTGAAGAGCTTCTTCATAGACCACCAGCGACAGCACCACCCTCCCCCGCCAAAGCCCGCCCTCTCGGAGCACTCCACCTCCAACCCCACCACCTCTTCCGACCATTCCCGATTCCACTCCGCTCCCATCCCTCCCGCCATGTACTCTGCGGTAGACCCACCACCTGCCACCCCGGCTGCTCCCAATAACCACATTGATGAAGATGACGAAGAGGAAGACGAGGAAGAAGCCGACTCCGACTCCGAGGCAGAAACGGCCCGGAACAGCCGCCGAACGTCAACGCCGGAGGCGTCAGGTGTGGCAGCTGCCGCGACTGCAGAACCGAGCGAGTTAATGCAGCTGGAGATGTCGGAGGATATCCGGGTGGGATCACCGGACGATGGCTCCAACAACCTTGACTCCGACTTCCACTTGCTAGGGGTGAGCCACCCTTCGGATCATGAGCGGCGTGCTGACTCGTATCGAGCCGAGTCGACCCGCAGGTGGGATGACCCGGGCCTTCAACTGCCAGCTTCAGGAAGTGCTCCACTACAAGACCTCACACAAGAAGACACCCACTACTCTCAAACGGTGTCCACCATCCTGCACAACCAGTCTATCCGGTGGGCCGAATCATCCTCCGTCGACTACATCACTTGCTCCTCCGAATCCGCTTTTGCCAAGTGGAACACCCGCGCCGATTACCACCATCATCACCTCCACGAGTCCACCGACGGCACCTCGCAGTGGCTCCTCAAGTATATTTTGTTCACCGTTCCTTTCCTTCACGCCAAGTACCAAGACGACAACTCACCCACGCCCCGAGACGGCGCTGATCCTGTCACGCGCTTGCGTGGGAAGGGAACACCGCAAGATGAGTTAAGTGCCAATCACGTGCTGGCGGAGCGGCGCCGCCGCGAGAAGCTCAACGAAAGGTTCATCATTCTAAGATCGCTCGTGCCCTTCGTCACCAAAATGGACAAGGCCTCCATATTAGGGGACACCATCGAGTACGTTAAACAGTTACGTAAAAAGATCCAGGATCTGGAGGCACGAAACCGACAGATGGAAACAGATCAACAGTCGAAGGAGCAGCAAAGGAGCTTGGCGCGAGTGGGGTCGGAAAAGAGGAAGATGAGGATAGTGGAGGGGAGCGGTGGCATGAGGAAACCGAAGACAGTGGAGGTGTCGCCGCCGGCATCACCATCAGGAGTAGTAACGTCGGTGCAGGTGTCGATCATAGAGAGCGATGCACTGTTGGAATTGGAATGCGAGTTCAGGGAGGGATTGTTGCTGGATGTGATGGAAGTGCTTCGAGAGATGCGGATAGAGGTGACAACGGTGCAATCGACGCTGAACAATGGGGTGTTCGTGGCGGAGCTGAGGGCCAAGGTTAAGGAAAATGCAAACGGAAAGAAAGCCAGCATAGTTGAAGTGAAGAGGGCCCTCAATCAAATCATACCCCACACTGATTGA 2013 0.5534 MAAPQSSRLQGMLQAAVQAVQWTYSLFWQPCPQQGILVWADGYYNGAIKTRKTVQPMEVSTEEASLQRSQQLRELYDSLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLAGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVELGTTDKVQEDHNFIQHVKSFFIDHQRQHHPPPPKPALSEHSTSNPTTSSDHSRFHSAPIPPAMYSAVDPPPATPAAPNNHIDEDDEEEDEEEADSDSEAETARNSRRTSTPEASGVAAAATAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHLLGVSHPSDHERRADSYRAESTRRWDDPGLQLPASGSAPLQDLTQEDTHYSQTVSTILHNQSIRWAESSSVDYITCSSESAFAKWNTRADYHHHHLHESTDGTSQWLLKYILFTVPFLHAKYQDDNSPTPRDGADPVTRLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEARNRQMETDQQSKEQQRSLARVGSEKRKMRIVEGSGGMRKPKTVEVSPPASPSGVVTSVQVSIIESDALLELECEFREGLLLDVMEVLREMRIEVTTVQSTLNNGVFVAELRAKVKENANGKKASIVEVKRALNQIIPHTD 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0675 670 Gene3D - 473 548 IPR036638 GO:0046983
Dere02g0675 670 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Dere02g0675 670 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 472 521 IPR011598 GO:0046983
Dere02g0675 670 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 474 545 IPR036638 GO:0046983
Dere02g0675 670 MobiDBLite consensus disorder prediction 446 476 - -
Dere02g0675 670 MobiDBLite consensus disorder prediction 326 348 - -
Dere02g0675 670 MobiDBLite consensus disorder prediction 194 359 - -
Dere02g0675 670 Pfam Helix-loop-helix DNA-binding domain 475 522 IPR011598 GO:0046983
Dere02g0675 670 MobiDBLite consensus disorder prediction 209 224 - -
Dere02g0675 670 Coils Coil 511 545 - -
Dere02g0675 670 SMART finulus 478 527 IPR011598 GO:0046983
Dere02g0675 670 MobiDBLite consensus disorder prediction 251 267 - -
Dere02g0675 670 PANTHER TRANSCRIPTION FACTOR TT8 4 667 - -
Dere02g0675 670 MobiDBLite consensus disorder prediction 532 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0675 Dere-ChrDere02 6318679 6323764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0675 307 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 39.782 4.08e-62 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere02g0675 bHLH-MYC_N 4.3e-52 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0675 02 6318679 6323764 Dere02g0675 02 6318679 6323764 ECH