Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0628 ATGAAGGAGAAGGCGGATTCTCCTATTGGAGTTCTTGAGGACTACTTCAGGAGTTCAGAGTCCGAAACAAGTTGTTCCAATTCCAAAGAACCCACGGTGGATTCTAAGTCTCAAGAAGATAAGTCAAAACCTGCTTCTAGATGGCGTGGTTTTCTTCAATTGTTGAGGACCAGATCAATGAAACCTACGGCCACATTGCATCCTCTCAGCCTCAGTGTCCTCAAGCTCTCCAAGAGATTGAGCAGTAGCATGAGAGAGACTTTACTGCCAGTGCCAAATTATCACACAGATGCAGATTCATCCCTCCACAGGTCACGCTGGAAGATCTTTACTCACCATGACATTCAAATGGCAACCAATCATTTCAGCCAGAAAAATTTGATTGGAAAAGGTGGTTATGCTGAGGTTTACAAGGGGTGTTTGCGAAATGGTCAGCTCGTAGCAATCAAACGGCTAACACGAGGAACTCCAGACGAGATCATTGGGGATTTCTTATCAGAACTAGGCATAATGGCGCATGTGAACCATTTCAATACGGCTAAGTTGGTTGGCTATGGAGTGGAAGGAGGAATGCATCTTGTTCTTCAATTGTCTGAAAAAGGGAGCTTAGCTTCGATGCTTTATGGTTCTAAGGAGACACTACCATGGTGTATAAGGCACAAAATTGCATTAGGAACCGCAAGGGGTATACTTTATCTTCACGAAGGTTGTCATAGAAGAATTATCCACAGAGATATAAAGGCTGCAAATATCTTGCTGACAGAGGACTTTGAACCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTGCCGGAGAATTGGACTCACCACACCGTTTCAAATTTTGAAGGGACTTTTGGATACCTTGCTCCAGAATACTTACTTCATGGCATAGTAGACGAGAAAACAGATGTATTTGCCTTTGGTGTATTGCTATTAGAATTAATCACCGGGAGGCGAGCGCTTGATCATTCCCAGCAGAGCCTTGTCTTGTGGGCAAAACCTCTGCTGAAAAAAAATGAAGTCAGGGAGTTGATTGATCCTTCACTAGCCCATGACTACGACTCTCGTCAAATTCATCTTGCGCTCTTTGCAGCTTCTTCATGCATAAAACAATCCTCAATTCGTCGGCCCTCTATGAGACAGGTCGTGCAGCTTCTAAATGGCAACCTTAGCGGCTTTAAGAACATGAAGAAAACTCGACTCTTGGTTTCCCGTAAAGTCTTACAGGAAGAGCCATACTGA 1245 0.4386 MKEKADSPIGVLEDYFRSSESETSCSNSKEPTVDSKSQEDKSKPASRWRGFLQLLRTRSMKPTATLHPLSLSVLKLSKRLSSSMRETLLPVPNYHTDADSSLHRSRWKIFTHHDIQMATNHFSQKNLIGKGGYAEVYKGCLRNGQLVAIKRLTRGTPDEIIGDFLSELGIMAHVNHFNTAKLVGYGVEGGMHLVLQLSEKGSLASMLYGSKETLPWCIRHKIALGTARGILYLHEGCHRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSNFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELITGRRALDHSQQSLVLWAKPLLKKNEVRELIDPSLAHDYDSRQIHLALFAASSCIKQSSIRRPSMRQVVQLLNGNLSGFKNMKKTRLLVSRKVLQEEPY 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0628 414 Gene3D Transferase(Phosphotransferase) domain 1 199 406 - -
Dere02g0628 414 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 93 196 - -
Dere02g0628 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Dere02g0628 414 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0628 414 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 199 401 - -
Dere02g0628 414 MobiDBLite consensus disorder prediction 17 32 - -
Dere02g0628 414 Gene3D Phosphorylase Kinase; domain 1 93 196 - -
Dere02g0628 414 ProSiteProfiles Protein kinase domain profile. 122 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0628 414 PANTHER OS08G0249100 PROTEIN 4 400 IPR046958 -
Dere02g0628 414 SUPERFAMILY Protein kinase-like (PK-like) 97 387 IPR011009 -
Dere02g0628 414 ProSitePatterns Protein kinases ATP-binding region signature. 128 150 IPR017441 GO:0005524
Dere02g0628 414 SMART serkin_6 122 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere02g0628 414 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0628 Dere-ChrDere02 5920062 5921949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0628 59 388 Trihelix Transcription Factor Family AT5G38560 38.889 8.24e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere02g0628 Pkinase 1.2e-40 CL0016