Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0619 ATGGCGGAGAAGGAGGAAAAAAAATACAGTGAGGAAAGAGTGAAACTGTTTGTAGGTCAAGTGCCGAAGCATATGACCGAGGCTGAGCTGCTAGTAATGTTCGAGGAGTTCGCTTTAGTGGAGGAGGTCAACATCATCAAGGATAAAGCTACTGGCGCCTCCCGAGGGTGCTGCTTTGTAATTTGTCCGTCCAGAGAAGAGGCAGATAAGGCGGTTAGTGCGTGTCATAATAAGAAAATGCTGCCTTGGGAAAAGAGGCACCATAGGCGTGGAAGCTACATTTGTTATTGTTTTTTATCAGCTAAACATCATCATTTGCCAATTGATTATGGACTCTTCTTTCTAAAGATAAGTGGTTATGCATCTATGGCATTTTGTAAACTAGGAATTATGAGAACTGGGAGAGGCCCTTCTTGGCCTTGCTCGACGTTCAGGTGGTTGCTCAGGCAGCCTTCTACATATTGGGCTACGCCCACCCGATTAATTGCATCAAGCCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGGCTAGAACACAAACTCTTCATTGGTATGCTTCCAAAGAATGTTTCTAAAGTTGAATTATCCACTCTTTTCTCCAAGTACGGGACTATAAAGGATTTACAGATTTTAAGAGGTCCTCAGCAAACAAGTAAAGGCTGTGCATTTTTGAAATATGAAACCAAAGAACACGCTCTTGCTGCCCTGGAGGCAATCAATGGAAAGCATAAAATGGAGCATTTTGGACCTTCATGCAGCATTCAGCCACAAAATCCTGTTGGTGAGGGACGTGAACCATTAAAGTTGTGTCTCAGATGCCATTGCACAAACTGGTTACGAGCTCAGAAATCGAAACTCAATCTCTGGCCCATAAAACTATTTATACCATTCACATTAAATGAGCCCAAGCTGAACAAAGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACTGAAAAGGAAAGGCAAGCTCGGAGGGCTCAGAAAGTGCAGTCCCTAACTTTTAGTGTGCCACATACTAATTCTCAGCATCCATCATTGTTTGGAGCCTTACCAATGGGTTATGTTTCTCCATATAATGGATATGGTTATCAGGCTGCTGGGGGTTATGGGCTTGTGCCATATCGCTTGCCACCAATGCAGAATCAACCAGGTTTCCATAATATGATGCCTCACATAAATCAAGGAACTGCCTTGCAGCCTGACCTTGGCCCCAATATGAACCCTAGAAATTATCCTGTGCCTCATGCAAGTTATGTTGGGTCATATCCTGCTGTACCGGGTCTACAGCATCCAATGGCATATCCTGGAGGATTGATGGGTCCAAGGCTTTTGAATAGTTCCCTTCCTGGTGTGAAAAGCTACTCTGCTACCTCTTCAGGGGCCAGTAAAAATTCGAGGAGTCAGGTCGAAGGACCGCCTGGGGCCAATCTCTTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCAACTTCTTTTCAACCATTCGGCCGAGTTTTGAGTGCTAAGGTTTTTGTTGATAAAATAACAGGTTTAAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAAGCTGCTCAAGCTGCAATTAGTAGAATGAATGGATGCGAATTAGGTGGCAAGAAACTAAAGGTTCAGCTTAAGAGGGACAACAAACAGAGGAAGCCTTACTGA 1695 0.4372 MAEKEEKKYSEERVKLFVGQVPKHMTEAELLVMFEEFALVEEVNIIKDKATGASRGCCFVICPSREEADKAVSACHNKKMLPWEKRHHRRGSYICYCFLSAKHHHLPIDYGLFFLKISGYASMAFCKLGIMRTGRGPSWPCSTFRWLLRQPSTYWATPTRLIASSPLQVKYADGELERLEHKLFIGMLPKNVSKVELSTLFSKYGTIKDLQILRGPQQTSKGCAFLKYETKEHALAALEAINGKHKMEHFGPSCSIQPQNPVGEGREPLKLCLRCHCTNWLRAQKSKLNLWPIKLFIPFTLNEPKLNKGSSVPLVVKWADTEKERQARRAQKVQSLTFSVPHTNSQHPSLFGALPMGYVSPYNGYGYQAAGGYGLVPYRLPPMQNQPGFHNMMPHINQGTALQPDLGPNMNPRNYPVPHASYVGSYPAVPGLQHPMAYPGGLMGPRLLNSSLPGVKSYSATSSGASKNSRSQVEGPPGANLFIYHIPQEFGDQELATSFQPFGRVLSAKVFVDKITGLSKCFGFVSYDSPEAAQAAISRMNGCELGGKKLKVQLKRDNKQRKPY 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0619 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 557 IPR000504 GO:0003723
Dere02g0619 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 551 IPR000504 GO:0003723
Dere02g0619 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 79 IPR000504 GO:0003723
Dere02g0619 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 245 IPR000504 GO:0003723
Dere02g0619 564 SMART rrm1_1 182 257 IPR000504 GO:0003723
Dere02g0619 564 SMART rrm1_1 15 91 IPR000504 GO:0003723
Dere02g0619 564 SMART rrm1_1 480 553 IPR000504 GO:0003723
Dere02g0619 564 SUPERFAMILY RNA-binding domain, RBD 11 80 IPR035979 GO:0003676
Dere02g0619 564 SUPERFAMILY RNA-binding domain, RBD 181 561 IPR035979 GO:0003676
Dere02g0619 564 PANTHER RNA BINDING PROTEIN 14 559 - -
Dere02g0619 564 CDD RRM3_CELF1-6 481 553 - -
Dere02g0619 564 Gene3D - 453 556 IPR012677 -
Dere02g0619 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 86 IPR000504 GO:0003723
Dere02g0619 564 FunFam RNA-binding protein BRN1 448 556 - -
Dere02g0619 564 Gene3D - 2 91 IPR012677 -
Dere02g0619 564 Gene3D - 179 258 IPR012677 -
Dere02g0619 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 244 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0619 Dere-ChrDere02 5850853 5855269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0619 471 564 Eukaryotic Initiation Factors Gene Family AT1G22760 35.106 3.48e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3342 01 48084555 48088764 Dere02g0619 02 5850853 5855269 CCT
Dere02g0619 02 5850853 5855269 Dere02g0619 02 5850853 5855269 ECH