Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0614 ATGTCGTTTAGGAGTATCATCCAGGATATAAAGGGTGAGTTTGGGAGTATTTCAAGGAAAGGATTTGAGGTGAAGTTGGGGTATGGGATGAGATCGAGGTCACAGTCATACCGTGATACTGGGGATAGTTTGGTGGTTGTTGATGGTTTGAAGCAGAGTTGTTGGGCTAATATGCCACCGGAGCTTTTGAGGGATGTGCTTATGAGGATAGAGGCCTCTGAAGACACCTGGCCCGCCCGAAAACATGTGGTTGCCTGCGCTGGTGTTTGCCGCAGTTGGAGAGAAATCATGAAAGAGATTGTGAAATCTCCTGAAGTATCTGGCAAATTGACACTCCCCATCTCCTTGAAGCAGCCTGGTCCAAGGGCCTCTCTTCTGCAGTGCTATATAAAACGGAATCGCAGTAATCAAACATATTATTTGTTCCTTGGTTTAAACCAAGCTTCAACTGATGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTCCTACCCACACAGACTATGTCATTTCTCTAAATTGTGATGATGTATCAAGAGGGAGTAGCACCTACATTGGAAAGTTGAGATCAAACTTTCTGGGTACCAAATTTACGGTGTATGATGCACACCCTCCAATTTGTGGAGCCAAAGTCACTAAATCTCGTTCAACCAGGCTAGTCAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCTGGCAACTATCCCATTGCGCATGTGTCATATGATCTGAATGTCCTTGGCTCTAGGGGCCCAAGGATAATGCACTGTGTTATGGATGCCATCCCTGCTTCGGCTGTTGAACCAGGAGGCTCAGGAAAACGTTATTCTCCAGTTTGGAAAAGTAGGAAAGGATGTGTTCACCATGGATTATCAGTATCCAATCTCAGCGTTTGA 900 0.4589 MSFRSIIQDIKGEFGSISRKGFEVKLGYGMRSRSQSYRDTGDSLVVVDGLKQSCWANMPPELLRDVLMRIEASEDTWPARKHVVACAGVCRSWREIMKEIVKSPEVSGKLTLPISLKQPGPRASLLQCYIKRNRSNQTYYLFLGLNQASTDDGKFLLAARKCRRPTHTDYVISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPICGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGSGKRYSPVWKSRKGCVHHGLSVSNLSV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0614 299 Gene3D Tubby Protein; Chain A 115 290 IPR025659 -
Dere02g0614 299 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Dere02g0614 299 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Dere02g0614 299 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Dere02g0614 299 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Dere02g0614 299 SUPERFAMILY Tubby C-terminal domain-like 104 276 IPR025659 -
Dere02g0614 299 Pfam F-box domain 55 101 IPR001810 GO:0005515
Dere02g0614 299 Pfam Tub family 116 269 IPR000007 -
Dere02g0614 299 CDD F-box_AtTLP-like 55 99 - -
Dere02g0614 299 PANTHER TUBBY-RELATED 36 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0614 Dere-ChrDere02 5819204 5822002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0614 1 274 TUB Transcription Factor Family AT2G47900 77.174 8.01e-158 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere02g0614 Tub 3.2e-53 CL0395