Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0599 ATGAATGAGGTAGAAGACCATTCTTCCACTATTGTTCTCATGGTCCAACCTTTTTGGTTACTGCTGTGCATATCTGCATGCAGGGAAGGATGCATGTCTGCATATCAAGTTGTTAACTTTGCAGGTATAAAGTTTGAGCTGGGGAGTGCAGCGCAAATAATGTGGGTCATCATTAACTCTGTAATTTGGAGGGAGGGATGTGGTAAGCAGTTGAGTGTATTATGGAGTGATACTATTTGCACAGCATTTGCATTCACACCTGCTCAGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACATGCAAATTTGACCATCCTTTGGGTTCTATGAGATACAATCCTTCAGCGTCTTCTCTCATTGATATGCCGGTTTCTCCATACCCAGTTGGGTCTTTGCTGTCTACCCTGGCTCCTTCAACAACATCTTCAGAGCTTCGGCCTGAACTGATGTCCGGGTCCAAAAATGAATCCTTTTCAACCAGGATGCCTTCTGCTGGAAATAATTCTGGCACTTCTGTCAGTTTAATTTTCTCACAAGGTGGATCCATCTCACTTTCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCTAAACAGTAGCAGAAGCACTCGACAAAGTGGTGAGATGCGAGGATCAAGCTAA 669 0.4425 MNEVEDHSSTIVLMVQPFWLLLCISACREGCMSAYQVVNFAGIKFELGSAAQIMWVIINSVIWREGCGKQLSVLWSDTICTAFAFTPAQGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYNPSASSLIDMPVSPYPVGSLLSTLAPSTTSSELRPELMSGSKNESFSTRMPSAGNNSGTSVSLIFSQGGSISLSDVQLSSQSSAPLNSSRSTRQSGEMRGSS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0599 222 SUPERFAMILY CCCH zinc finger 90 119 IPR036855 GO:0046872
Dere02g0599 222 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Dere02g0599 222 MobiDBLite consensus disorder prediction 196 222 - -
Dere02g0599 222 Gene3D - 86 140 - -
Dere02g0599 222 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Dere02g0599 222 MobiDBLite consensus disorder prediction 147 179 - -
Dere02g0599 222 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0599 Dere-ChrDere02 5707145 5709647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0599 90 168 C2H2 Transcription Factor Family AT5G18550 51.852 1.67e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g0599 zf-CCCH 4.5e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3368 01 48273849 48281451 Dere02g0599 02 5707145 5709647 CCT
Dere02g0599 02 5707145 5709647 Dere02g0599 02 5707145 5709647 ECH