Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0598 ATGGAGTTGTACGGTCGAACTCCGGTGAGGAATGGGTCGCAACCCGGTTATCAATCTGAGTGGCGCCCAGCAACTGGCGACACTGGGCTAGAAGAATCGATGTGGCAGTTAGCACTCAGTAGCGGCGAATCATACCCGGAGCGACCCGGCGTCCCAAATTGTGTGTATTACATGCGAACCGGGTTCTGCGGATATGGTAGCAGGTGTCGTTACAATCATCCCCGTGATCGCGCTGCGGTTGCTGCTGCTGTAAGAGTTACAGGGGAGTACCCAGAACGGGTGGGGGAACCTCCCTGTCAGTACTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTTCACCATCCGAAACATGGTGGTGGATCTTTAAGTCAAGCTCCACTAAATATTTATGGATACCCAATACGCCTGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAGCCAGCTGGCACATCAATGTCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTTCGGTTCCTCTGCCTGAACAGTATGGGGGGGCTTCCACCAGCATGAGAGTGGGAGTGGCAAGGCCTCCGATGATGCCCGGTTCATACGTGCAGGGTGCTTATGGTCCTGTTCTTCTTTCCCCTGGAGTTGTTCCCTTTACAGGATGGAGTCCTTATTCGGCACCTGTTAGTCCTGTGTTGTCTCCTGGTGCTCAACCTGCTGTTGGTGCTACTTCTTTGTATGGAGTGACCCAGATGTCTTCATCAACATCAGCTTTTGCCAGACCATATACTCCTCTGCTCTCTTCTACTGGCCCTTCAGGCAGCAGCCAGAAGGAACAACTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATATTATCTGAGAACAGGGGACTGTAAATATGGATTAGCTTGTCGATATCATCATCCTAGGGATCGTGCTGCAACACGGCCACTTCTCAGCCCCATGGGTCTTCCTTTACGTCTGTTGTAG 1035 0.4986 MELYGRTPVRNGSQPGYQSEWRPATGDTGLEESMWQLALSSGESYPERPGVPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRVTGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPIRLGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMSASAPQFYQQVQSPSVPLPEQYGGASTSMRVGVARPPMMPGSYVQGAYGPVLLSPGVVPFTGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQMSSSTSAFARPYTPLLSSTGPSGSSQKEQLFPERPGEPECQYYLRTGDCKYGLACRYHHPRDRAATRPLLSPMGLPLRLL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0598 344 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Dere02g0598 344 SUPERFAMILY CCCH zinc finger 303 327 IPR036855 GO:0046872
Dere02g0598 344 FunFam Zinc finger nuclease 2 47 124 - -
Dere02g0598 344 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Dere02g0598 344 PANTHER PROTEIN PHOSPHATASE RELATED 31 342 - -
Dere02g0598 344 Gene3D - 92 177 - -
Dere02g0598 344 Gene3D - 43 86 - -
Dere02g0598 344 Gene3D - 288 336 - -
Dere02g0598 344 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Dere02g0598 344 MobiDBLite consensus disorder prediction 279 299 - -
Dere02g0598 344 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Dere02g0598 344 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Dere02g0598 344 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Dere02g0598 344 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Dere02g0598 344 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Dere02g0598 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Dere02g0598 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Dere02g0598 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 325 IPR000571 GO:0046872
Dere02g0598 344 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Dere02g0598 344 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Dere02g0598 344 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Dere02g0598 344 SUPERFAMILY CCCH zinc finger 139 167 IPR036855 GO:0046872
Dere02g0598 344 MobiDBLite consensus disorder prediction 1 25 - -
Dere02g0598 344 MobiDBLite consensus disorder prediction 279 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0598 Dere-ChrDere02 5704625 5706891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0598 1 342 C2H2 Transcription Factor Family AT5G18550 50.000 2.23e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere02g0598 zf-CCCH 3.2e-09 CL0537