Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0587 ATGTCGAATATATCAGGTGAAGAAAGTTTCTGTTCAGGCGAAGAAGTGCAATACCAGCAAAACGAGCAACAACAAAACAACCACTTCCATGGCTCAAGCTCAGGCCCTTCTGCTGCTTCCAACAGCAATACCTCCAGTAATAATAATCAACAGCAGCATCAGCCAACGAAGAAGAAAAGAAATCTCCCTGGAACTCCAGGCAAATTCAATTCTTCTCCTCATCAGCCACAACATCCGAATGCCGAAGTGATAGCTTTATCACCGACGACATTGATGGCGACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAGAACCTTCAGTTGCACCGGAGGGGTCACAATCTGCCATGGAAACTGAGGCAGAGACCGAGCAGCGAGGTGACGAAGAAACGGGTGTACGTGTGCCCCGAACCCTCATGCGTGCACCATAACCCAGCTCGCGCACTAGGAGACCTCACTGGCATCAAAAAGCACTATAGCCGAAAACACGGCGAGAAGAAATGGAAATGCGACAAATGCTCCAAACATTACGCTGTCCAATCTGATTGGAAAGCCCACCAAAAAACCTGCGGTACCCGCGAATACAAATGCGATTGTGGCACCATATTTTCCAGGAGAGATAGTTTTATTACCCATAGAGCGTTTTGTGAGGCATTGACCGAAGAAAACAATCGTGTAAACCAGGGAATAATGAGTGAAAATTCTACAGTGCCTCTAAGCACCACTTCCAATACAGCTTCCGAGTTCAACCCACTGGTTCCCCAAGAGCTTCTTCCAATGCCGTTCAGGTCCATGAGCATGAGCGTGTGTGGGGGAATGTTCTCCACCACTTCCGGGGCACTTTTTGGAGGTCCAAAAGGCTTGTCTCCTTCTTCTTCTAGCCTTCACCTCAGTTCCGACACCTCCTCTGTTTTCAATTACTTCCATGATGACAAGAACGGAGCTTACATGTCTGCTACGGCTTTGCTACAGAAAGCAGCCCAAATGGGAGCCACTGCAAGCAATAATAGCATCAACTCTTCCATGATTCAAAAAGGGTCTGTTACTTCCATGGCTGGTCCTGATCACCACCTCATTAGACCGCCCTATGACTACTTCCATCCCCACCATGAATCTAACCTGGCTGGGATTAGTGGTGGTGGAGCATTCACCAACCAGTTGTTTCAGAAAGGCCCACAAGAAATCTCACGATTTTTTGACACAAACAATGGATCGACAACGAATGATGTGGGAATGTTGAGCCAAATGTTCATGGGCAGTGAGCCCAACCCGGGGTTGATGAAGAATATTGCAGAACAAGAGGGCAGTATTAGTTCGAGTTTGATGGATGGAACTGGAAGAGATGCAGCACAAGGGAACCCAATGGGGTCTTCAAGGTATGGAGGAGGGAGTGATATGACAACAGTTCATGACTTCTTGGGTGTTGGGGGTTCGAGTGCGAGGGCATCGAATTTGCATGAATTCCACAGTAGCATTAGCAATGATGGTGATTGGAGTTGGAAGCAATTATGA 1530 0.4745 MSNISGEESFCSGEEVQYQQNEQQQNNHFHGSSSGPSAASNSNTSSNNNQQQHQPTKKKRNLPGTPGKFNSSPHQPQHPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSSEVTKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKHYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCEALTEENNRVNQGIMSENSTVPLSTTSNTASEFNPLVPQELLPMPFRSMSMSVCGGMFSTTSGALFGGPKGLSPSSSSLHLSSDTSSVFNYFHDDKNGAYMSATALLQKAAQMGATASNNSINSSMIQKGSVTSMAGPDHHLIRPPYDYFHPHHESNLAGISGGGAFTNQLFQKGPQEISRFFDTNNGSTTNDVGMLSQMFMGSEPNPGLMKNIAEQEGSISSSLMDGTGRDAAQGNPMGSSRYGGGSDMTTVHDFLGVGGSSARASNLHEFHSSISNDGDWSWKQL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0587 509 MobiDBLite consensus disorder prediction 1 79 - -
Dere02g0587 509 Pfam Zinc finger, C2H2 type 97 119 IPR013087 -
Dere02g0587 509 Gene3D Classic Zinc Finger 153 232 - -
Dere02g0587 509 FunFam protein indeterminate-domain 5, chloroplastic-like 152 231 - -
Dere02g0587 509 FunFam protein indeterminate-domain 12-like 76 145 - -
Dere02g0587 509 SUPERFAMILY beta-beta-alpha zinc fingers 96 195 IPR036236 -
Dere02g0587 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Dere02g0587 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 487 IPR031140 -
Dere02g0587 509 MobiDBLite consensus disorder prediction 444 469 - -
Dere02g0587 509 SMART c2h2final6 97 119 IPR013087 -
Dere02g0587 509 SMART c2h2final6 139 169 IPR013087 -
Dere02g0587 509 SMART c2h2final6 174 194 IPR013087 -
Dere02g0587 509 Gene3D Classic Zinc Finger 77 143 - -
Dere02g0587 509 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0587 Dere-ChrDere02 5622639 5624572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0587 34 344 IDZ Gene Family AT3G50700 52.089 5.41e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere02g0587 zf-C2H2 0.0051 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2888 01 43639289 43641074 Dere02g0587 02 5622639 5624572 CCT
Dere02g0587 02 5622639 5624572 Dere02g0587 02 5622639 5624572 ECH