Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0586 ATGGGTGATAACTTAGAGAGAGAAGGCCTTAATAAGTCGTACAGCTTCAACAGCGTTGCTCATCATCATCAAGATGGGGGAGTCATCAAGGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGAGGATTATGAAGCAAATTCTGCCTCCTAACGCCAAAATCTCAAAAGAAGCAAAGGAAACCATGCAAGAATGTGTGTCTGAGTTCATAAGCTTCGTCACTGGGGAAGCCTCTGACAAGTGTCACAAGGAGAAGCGCAAGACGGTGAATGGCGACGATATTTGCTGGGCTTTGGCTACTCTAGGGTTTGATGACTACGCTGACCCACTCAAGAGGTATTTGCATAAGTATAGAGAATCAGAGGGTGAGAGAGCTAACCTGAATAAGGGTAACAGTGTTAACAGTGATGAACTTAATGCTGAAGCATATGAGTATGGAGGTGAGCCGCACAGGAGAGCACCCACTACTAGTAGTGCTTCTTCTGGTGCTGGCATCTCGTTGATGAAGTTCAATATGAGTGATAGGGGCAACGGCTCCTCTCACTCTCGCCAATTTTCGAACTTCTAG 570 0.4614 MGDNLEREGLNKSYSFNSVAHHHQDGGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYADPLKRYLHKYRESEGERANLNKGNSVNSDELNAEAYEYGGEPHRRAPTTSSASSGAGISLMKFNMSDRGNGSSHSRQFSNF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0586 189 FunFam Nuclear transcription factor Y subunit B-3 24 146 - -
Dere02g0586 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Dere02g0586 189 Gene3D Histone, subunit A 24 154 IPR009072 GO:0046982
Dere02g0586 189 SUPERFAMILY Histone-fold 32 142 IPR009072 GO:0046982
Dere02g0586 189 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Dere02g0586 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 149 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere02g0586 189 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Dere02g0586 189 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Dere02g0586 189 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0586 Dere-ChrDere02 5604312 5604881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0586 12 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.455 1.52e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere02g0586 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0586 02 5604312 5604881 Dere02g0586 02 5604312 5604881 ECH