Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0562 ATGAAGTTCTGCAAGAAATACGAGGAGTACATGCGAGGCCAGCAGAAGAAACTTCCTGGGGTTGGTATCAAGAAGCTTAAGAAGATCTTGAAGAAGTGCAGGAGAGACTGTCAATCCCGCAAAGGTCTCAATGAAGCCCTTAGCGTTCGAACCTGCCCCGATCAATGCCCCGTGTGCGATGGGAGCTTCTTCCCTTCCCTTCTCAACGAGATGACTGAAGTAGTAGGCTGCTTTAATGAGCGTGCCCAAAAATTGATGGAGCTACATCTTGCATCTGGATTCAGAAAGTACTTTTTCTGGTTCAAAGGCAAATTACGTGGAAACCATACTGCCCTCATTCAAGAAGGCAAAGACCTGGTTATTTATGCACTGATTAATGCCATTGCAATTAGAAAGATACTAAAAAAATATGATAAGATTCATTATTCGAAGCAAGGGCAATTATTTAAGTCACAAGCCCAGAGTATGCACGTGGAAATTCTTCAGAGTCCTTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAAGGAAAGCAAAATCAAATCCATGAAGGCACCTGCTTTCTTTGATGGATGTTCCCTCACAATTAAGGATGACAAACCATCACTTACTTGTGAGCTATTTGATTCCATCAAACTTGATATTGACTTGACTTGTTCTATATGCTTGGAAACAGTATTTGATCCAGTTTCTCTTACTTGTGGCCATATATTCTGCTACATGTGTGCTTGCTCGTCTGCATCAGTAACTATTGTTTCTGGACTTAAGGAAGCTGATTCTAAAGCAAAATGTCCTCTGTGCCGAGTGGGAGGAGTTTATGAAAGTGCTGTACGCTTGGAAGAATTAAATATTCTGTTAGGCCGAAGCTGCCCGGAATACTGGGAACAAAGGCTTCAGACAGAGAGGGTAGAAAGGGTTAAGCAAATAAAGGAGCACTGGGAATCGCAGTGTAGGGCATTCGTGGGTGTCTAA 975 0.4256 MKFCKKYEEYMRGQQKKLPGVGIKKLKKILKKCRRDCQSRKGLNEALSVRTCPDQCPVCDGSFFPSLLNEMTEVVGCFNERAQKLMELHLASGFRKYFFWFKGKLRGNHTALIQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSQAQSMHVEILQSPWLCELMAFHINLKESKIKSMKAPAFFDGCSLTIKDDKPSLTCELFDSIKLDIDLTCSICLETVFDPVSLTCGHIFCYMCACSSASVTIVSGLKEADSKAKCPLCRVGGVYESAVRLEELNILLGRSCPEYWEQRLQTERVERVKQIKEHWESQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0562 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 322 IPR013083 -
Dere02g0562 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Dere02g0562 324 CDD SPX_BAH1-like 2 147 - -
Dere02g0562 324 SMART ring_2 220 268 IPR001841 -
Dere02g0562 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Dere02g0562 324 Pfam Zinc finger, C3HC4 type (RING finger) 220 268 IPR018957 GO:0046872
Dere02g0562 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Dere02g0562 324 CDD RING-HC_BAH1-like 210 283 - -
Dere02g0562 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
Dere02g0562 324 SUPERFAMILY RING/U-box 213 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0562 Dere-ChrDere02 5374165 5376920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0562 217 269 C3H Transcription Factor Family AT4G28270 37.931 4.18e-06 45.1