Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0558 ATGGTCGCAAGAAAAATGAGTAGACGTTCGAGCGCGACTGTCTACGTTGGGAATCTACCTGGTGATATTCGTGAAAGGGAAGTGGAAGATTTGTTTCTCAAGTATGGACACATAGCTCACATTGACCTGAAGGTTCCTCCGAGGCCCCCAGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTCAAGATGCAATTCGAGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCACATGGTGGACGTGGTCATTCATCATCAAGGGATCGATATAGTAGTCACAGCAATGGTCAAGGTGGACGCGGGGTATCTAGGCGCTCTGAATATCGTGTTCTTGTCACTGGGTTGCCCTCGTCTGCTTCCTGGCAGGATCTCAAAGATCACATGCGAAAGGCAGGAGATGTTTGTTTCTCTCAAGTTTTCAATGACAGAAAAGGTACTACTGGAATTGTGGATTACACAAACTTTGATGACATGAAGTACGCGATCAAAAAACTTGATGACTCTGAGTTCCGGAATTCTTTCTCCAGGGCTTATGTTCGCGTGAGGGAGTATGATTCAAGGCGTGACTCATCTAGAAGTCCTACTCGTGGCCGGTCTTATTCTAGGGGAAGAAGCTATAGCCACAGTTGTAGTCGTAGTTACAGTCGGGGCCAGAGCAAGAGTAAATCTCCAAAGGGAAAGTCTTCACAGCATTCACCTGCTAGATCTCCTGCAAGATCTGTTTCTCGTTCTCGTTCGAGGTCAAGGTCCCATTCTTTGTCCGGATATGGATACTTGCAGCAAACTGGGAATTGGAAATTAGGAACTATATGGGATTTGGTTCAATTGCCTGCAACTCAGTTTGTTGTGGAGATTGGGAACAAAGGAGATCTTGGATTGCTATTTTAG 912 0.4627 MVARKMSRRSSATVYVGNLPGDIREREVEDLFLKYGHIAHIDLKVPPRPPGYAFVEFEDAQDAQDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGQGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFNDRKGTTGIVDYTNFDDMKYAIKKLDDSEFRNSFSRAYVRVREYDSRRDSSRSPTRGRSYSRGRSYSHSCSRSYSRGQSKSKSPKGKSSQHSPARSPARSVSRSRSRSRSHSLSGYGYLQQTGNWKLGTIWDLVQLPATQFVVEIGNKGDLGLLF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0558 303 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 260 - -
Dere02g0558 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 181 IPR000504 GO:0003723
Dere02g0558 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 81 IPR000504 GO:0003723
Dere02g0558 303 SUPERFAMILY RNA-binding domain, RBD 10 184 IPR035979 GO:0003676
Dere02g0558 303 CDD RRM1_SF2_plant_like 13 83 - -
Dere02g0558 303 Gene3D - 3 114 IPR012677 -
Dere02g0558 303 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 6 115 - -
Dere02g0558 303 CDD RRM2_SF2_plant_like 116 191 - -
Dere02g0558 303 SMART rrm1_1 117 186 IPR000504 GO:0003723
Dere02g0558 303 SMART rrm1_1 13 83 IPR000504 GO:0003723
Dere02g0558 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 87 IPR000504 GO:0003723
Dere02g0558 303 MobiDBLite consensus disorder prediction 78 96 - -
Dere02g0558 303 MobiDBLite consensus disorder prediction 191 263 - -
Dere02g0558 303 FunFam serine/arginine-rich splicing factor SR34A-like 116 193 - -
Dere02g0558 303 Gene3D - 115 193 IPR012677 -
Dere02g0558 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Dere02g0558 303 MobiDBLite consensus disorder prediction 78 115 - -
Dere02g0558 303 MobiDBLite consensus disorder prediction 204 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0558 Dere-ChrDere02 5346459 5350384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0558 8 178 Eukaryotic Initiation Factors Gene Family AT4G34110 24.022 1.86e-07 50.4