Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0530 ATGGCTTTCAAGCTCTTGTCCCTTTTCCTTCTGCTTTCCTTCTTCGTATGGTTATCTGCCGCGCTAGATAACCCTTTAACCTCCATTATCTCTCCAGACACAATTTGTAGCTCCACCACAGACCCCTCTTTCTGCAAATCCGTGCTTGGCAATCAAAACGGCAACATCTTCGACTATGGCCGCACATCCCTTCGAAAGTCATTGTCCCAGTCCCGTAAGTTCTTGAAATTAGTGAACTCCTATCTTCAATCTCGATCCTCTTTATCTCTGCCCACCATTCGGGCTCTCGAGGATTGTCGTTTCCTCGCTGAACTAAGCTTCGAGTTCTTATCAAACACCCTGGACACGGTCAATAAAATTAGTGACCTTCTACCTTCTTCCAATGCCGAAGATCTTCAAACCTTGTTCAGTGCCGTTTTGACAAACCAACAAACTTGTCAGGAAGGCCTAGACACGTCAGCTTCGGATCAAAGAGTGAAGGACGATCTTTCGTCCTCACTCTCGGACGACACCAAGCTTAACAGTGTGTCTCTTTCTCTGTTCACCAAGGGTTGGGTGCCCAAGCAGAACATTATAACATCATGGTTACGCAATGGGAGACATTTGGAATTCCGGAATGGTCGTTTACCTTTGAAAATGTCAGATCGAGTACGTGCCATTTACGACTCCGCAAGAGGCCACGGCAGAAAACTGCTTCAGACCGATGACGAAAGTGTGGTGGTCAGTGACATTGCGGTTGTCAGTCAGGATGGAAGCGGAAACTTCACCACCATCAACGACGCCGTAAATGCTGCCCCTAACAACACAGCTTCAACTGATGGTTACTTCTTGGTCTTCATCACCGAGGGCGTGTATCAAGAATACGTATCCATACCCAAGAACAAGAAGTACTTGATGTTAGTCGGTGATGGCATCAACCGCACAATTATCACCGGCGACCACAACGTTGTCGATGGTTTCACAACATTCAATTCAGCAACATTTGCGGTGGTAGCAACAGGATTCGTGGCAGTGAACATAACATTCCGCAACACGGCGGGGTCGAGCAAGCACCAAGCAGTTGCACTGAGAAGCGGAGCGGACATGTCCACCTTTTACAGCTGCAGCTTCGAAGGGTACCAAGACACTCTGTACACGCATTCTCTGAGGCAATTCTACAGAGAATGCGACATATACGGCACCGTTGACTTCATATTTGGGAACGCAGCCGTGGTGTTGCAAAACTGCAACGTGTATCCCCGTCTTCCCTCGAGTGGTCAATTCAATGCCATCACGGCTCAGGGTCGAACCGACCCGAATCAGAACACGGGGACTTCCATACAGAACGCCGTTATAAAAGCAGCGGACGATCTGGCGCCATCGGTGGGGTCGGTTCAAACGTACCTGGGGAGACCATGGAAGGAGTATTCGAGGACTGTGTATATGGAGTCATTCATGGACAGTTTGATTGATCCTGCTGGTTGGCACGAGTGGAGTGGGACATTCGCTTTGAGCACCTTGTACTACGCAGAGTATAGTAACAGAGGCCCCGGGTCAGACACAAGCAACAGAGTGACGTGGCCTGGTTACCACGTCATCAATGCCAGCGATGCAGCTAATTTTACGGTCTCGAACTTCTTGGCGGGAGATAATTGGTTGCCTCAGACTGGGGTTCCATACTCCGGTGGATTTACGTCCTAG 1680 0.4923 MAFKLLSLFLLLSFFVWLSAALDNPLTSIISPDTICSSTTDPSFCKSVLGNQNGNIFDYGRTSLRKSLSQSRKFLKLVNSYLQSRSSLSLPTIRALEDCRFLAELSFEFLSNTLDTVNKISDLLPSSNAEDLQTLFSAVLTNQQTCQEGLDTSASDQRVKDDLSSSLSDDTKLNSVSLSLFTKGWVPKQNIITSWLRNGRHLEFRNGRLPLKMSDRVRAIYDSARGHGRKLLQTDDESVVVSDIAVVSQDGSGNFTTINDAVNAAPNNTASTDGYFLVFITEGVYQEYVSIPKNKKYLMLVGDGINRTIITGDHNVVDGFTTFNSATFAVVATGFVAVNITFRNTAGSSKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNVYPRLPSSGQFNAITAQGRTDPNQNTGTSIQNAVIKAADDLAPSVGSVQTYLGRPWKEYSRTVYMESFMDSLIDPAGWHEWSGTFALSTLYYAEYSNRGPGSDTSNRVTWPGYHVINASDAANFTVSNFLAGDNWLPQTGVPYSGGFTS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0530 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 183 IPR035513 -
Dere02g0530 559 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Dere02g0530 559 PANTHER PECTINESTERASE 17 547 - -
Dere02g0530 559 FunFam Pectinesterase 238 557 - -
Dere02g0530 559 NCBIfam pectinesterase inhibitor domain 6 182 IPR006501 GO:0004857
Dere02g0530 559 Gene3D - 239 557 IPR012334 -
Dere02g0530 559 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Dere02g0530 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 183 IPR035513 -
Dere02g0530 559 SUPERFAMILY Pectin lyase-like 241 556 IPR011050 -
Dere02g0530 559 SMART PMEI_2 27 180 IPR006501 GO:0004857
Dere02g0530 559 FunFam Pectinesterase 33 183 - -
Dere02g0530 559 Pfam Pectinesterase 245 543 IPR000070 GO:0030599|GO:0042545
Dere02g0530 559 CDD PMEI-like_3 34 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0530 Dere-ChrDere02 5110979 5112768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0530 8 559 Carbohydrate Esterase AT1G02810 58.651 0.0 675