Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0529 ATGTTCAACCTCAGAAGAAGAACACTCTCGCTGGCCCTTGTGCCCCTTTTTTCTGTACTCTTCCTCCTGTTCTTTGCACTAATTTCAACTGGTAACAACCAAAAAGCAACAAAACTCCCAGAAACACACCTCCATTTCCAAAAACACATTCAAGTAGCCCACACAACATGCCAAGGAACTCTCTACCCTGACCTCTGTGTGTCCACCCTCGCTTCCTTCCCCGATCTTACCAACAAATCTGTTCCACAAGTCATCTGCTCCCTCATCAACCACACCGTGGACGAGGTCAGATCCTCATCCTCCAACTGTACTGGTCTACGAAAGAAGCTCAGAAATCTAAACCCGTTTGAACAGAGAGCTCTGGACGATTGCCTCCAACTGTTCGATGACACTGTGGAGGAGCTCAAAACTAGCATTACTGATCTCTCCCAGACCCAAATTGGGTCCAAGCGCTACCACGACTCCCAGACTCTGCTGAGCGGCGCGATGACCAACGTGTATACGTGCCTCGATGGCTTTGCGGACAGTGACAGCAAAGGCAATGTGAGACGCATAATCCAGAACAGGTTGCTCCAGATTTGCCATCACATTAGTAACTCCTTGGCCATGCTCAAGAAAGTGCCTGGAGTGAAGCAACAGTCCGAGTCTGAGGCATTCCCGGAGTACGGCAAAATGAAACATGGTTTCCCATCCTGGATCGCCTCCAAAGACAGAAAGCTACTTCAAGCTGCCGTGAACGAGACCAAGTTCGATCTAGTGGTGGCCAAAGATGGCACTGGCAATTTCACCACCATAGGGGAAGCAGTAGCTGCAGCTCCTAACTCCACCAAAACCAGGTTTGTAATACACGTAAAAGCTGGGGCGTACTTCGAGAATGTGGATGTGTCCAGGAAGAAGACTAATCTGATGTTCGTTGGAGATGGAATTGGAAAGACGATAGTGAAAGCCGGTAGAAATGTTGTGGATGGGTGGACCACTTTTCAATCAGCTACAGTAGCGGTGGTCGGAGACGGATTCATAGCGAAGGGGATAACGTTCGAGAACTCAGCGGGGCCCAGCAAACACCAAGCCGTGGCCCTCAGAAGTGGCGCCGACCTCTCCGTCTTCTATAAATGCAGCTTCGTTGCCTACCAAGACACTCTCTACGTCCACTCGCTCCGTCAGTTCTATCGCGAATGCGACGTCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACCTCTACGCACGCAAGCCCGACCCCAACCAGAAGAACCTGTTCACCGCTCAAGGCCGAGAGGATCCTAACCAGAACACTGGCATTTCTATCCTCAACTCCAAGGTGGCTGCTGCTTCGGATTTGATCCCCGTCAAGTCGTCCTTCAAGACCTACTTAGGGAGACCCTGGAAGATGTATTCGAGGACGGTTTATCTGAAGTCGAATATGGAGGATTTGATTGACCCTGCGGGATGGTTGGAGTGGAACGGCACGTTTGCACTGGATACGCTGTATTATGGGGAGTACAAGAATAGGGGTCCTGGCTCCAACACCAGCGCCAGAGTGAAATGGAGTGGCTATAGGGTCATCAATTCTTCCACTGAGGCTGCCCAGTTCACTGTTGCCCAGTTTATTCAAGGCAATGAGTGGTTGAACTCCACTGGTATTCCTTACTTCCCTAATCTCACCCCCAGCTGA 1698 0.5088 MFNLRRRTLSLALVPLFSVLFLLFFALISTGNNQKATKLPETHLHFQKHIQVAHTTCQGTLYPDLCVSTLASFPDLTNKSVPQVICSLINHTVDEVRSSSSNCTGLRKKLRNLNPFEQRALDDCLQLFDDTVEELKTSITDLSQTQIGSKRYHDSQTLLSGAMTNVYTCLDGFADSDSKGNVRRIIQNRLLQICHHISNSLAMLKKVPGVKQQSESEAFPEYGKMKHGFPSWIASKDRKLLQAAVNETKFDLVVAKDGTGNFTTIGEAVAAAPNSTKTRFVIHVKAGAYFENVDVSRKKTNLMFVGDGIGKTIVKAGRNVVDGWTTFQSATVAVVGDGFIAKGITFENSAGPSKHQAVALRSGADLSVFYKCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISILNSKVAAASDLIPVKSSFKTYLGRPWKMYSRTVYLKSNMEDLIDPAGWLEWNGTFALDTLYYGEYKNRGPGSNTSARVKWSGYRVINSSTEAAQFTVAQFIQGNEWLNSTGIPYFPNLTPS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0529 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 207 IPR035513 -
Dere02g0529 565 Gene3D - 245 562 IPR012334 -
Dere02g0529 565 Pfam Pectinesterase 251 548 IPR000070 GO:0030599|GO:0042545
Dere02g0529 565 FunFam Pectinesterase 49 208 - -
Dere02g0529 565 PANTHER PECTINESTERASE 25 552 - -
Dere02g0529 565 SMART PMEI_2 48 203 IPR006501 GO:0004857
Dere02g0529 565 FunFam Pectinesterase 245 562 - -
Dere02g0529 565 NCBIfam pectinesterase inhibitor domain 19 206 IPR006501 GO:0004857
Dere02g0529 565 Pfam Plant invertase/pectin methylesterase inhibitor 54 203 IPR006501 GO:0004857
Dere02g0529 565 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Dere02g0529 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Dere02g0529 565 SUPERFAMILY Pectin lyase-like 249 560 IPR011050 -
Dere02g0529 565 CDD PMEI-like_3 55 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0529 Dere-ChrDere02 5088953 5092327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0529 77 562 Carbohydrate Esterase AT4G02320 54.728 0.0 570