Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0521 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCACCGTGGTCGCCGTCTTACCGCCTCCGACCTCTGGCCTGAATCATTCGGCAACAACAATGACTTCCCCCTCGATACTTCTCAACTGCCCCAGGATCACTTCGTCCCCCTCCAAAAGCCCCAACTTCCCCCAGTCAGCGAGCAAGATGAGAAGCCCCCCAAGAGGCAGAGGAAGAACCTCTACAGAGGGATTCGGCGTCGTCCATGGGGCAAATGGGCTGCTGAGATTCGCGATCCGAGGAAAGGGGTTCGTGTTTGGCTCGGTACCTTCAACACTGCGGAAGAAGCTGCCAGGGCATATGACAGAGAAGCCCGCAAAATCCGCGGCAAGAAAGCCAAGGTGAATTTTCCCAACGAAGACGATGATGTCTCCATTCAGGCTCGTCGTAACCCAGCGGCCCCACCCCAATGCTCGAACGATGGCCCTAGAAACCTGAATTTGGAGTTTGGATATGATCTAAACCAAGTTGGGGCAAGTTCCTCCCATGGGTGTTGGTTGATGGGCTCGGATCAGAGGAAGGAGAGTGAGGAAGCGAAAACGAAGAGGGTGGTGATAGAAGGGGAGGAGGAAGAGAACCAAGTAGATAAGATGTCGCAGGAGCTGACGGCGTTCGAGAACTGCATGAAGTTTTATCAGATTCCATACTACGATGGCCAATCGACCCCACGAAATAACGTTGAAGAAAACATGAAAAAGAGGAAAAAGAAGAGAGGGAAAGAAGGGGGAAACAAATCCAGGAGCGCTGTGGGTTTTGGTTTGACATTCCCAAAGTGTGCCTACATTAGAACCCAATCCACCCCAAAAAAAGGAGAAGAAAGACCTCAAAACCCTAGGGTTAATGATAGAGGTAATATATTGCCCTCATCTGCGAGCTGCGGTAGAGTCGGCAGCTGCTATAGCGGACAGGGGAAGATGGTTTCGCTGAAACTTCAGAAGCGGCTCGCCGCTAGCGTGCTCAAGTGCGGCAGAGGCAAGGTTTGGCTGGATCCTAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTAGTCAAGGATGGCTTCATTATCAGAAAGCCAACCAAAATTCACTCTCGTTCTCGGGCCCGTCGAATGAAGGAGGCCAAGAGAAAGGGACGCCACTCTGGATACGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTGCTCAGACGCTTGCTTCGCAAGTATAGGGAATCCAAAAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAAAGAGTTCTAATGGAGAGCATTCACAAGTCTAAGGCTGAGAAGGCAAGAGAGAAGACTTTGTCTGACCAGTTTGAAGCCAAGCGTGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCCCGGAGAGAGGAGCGCTTGGCTCAGGGTCCCGTAGAGAAGATATCAGTAGCGCCAACTGCACCTCCTGCTACTGCATCCCAGCCAGCCCAAGCACCAAAGAAATCCAAGAAGTGA 1590 0.5082 MCGGAIIADFIPRHRGRRLTASDLWPESFGNNNDFPLDTSQLPQDHFVPLQKPQLPPVSEQDEKPPKRQRKNLYRGIRRRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDVSIQARRNPAAPPQCSNDGPRNLNLEFGYDLNQVGASSSHGCWLMGSDQRKESEEAKTKRVVIEGEEEENQVDKMSQELTAFENCMKFYQIPYYDGQSTPRNNVEENMKKRKKKRGKEGGNKSRSAVGFGLTFPKCAYIRTQSTPKKGEERPQNPRVNDRGNILPSSASCGRVGSCYSGQGKMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPVEKISVAPTAPPATASQPAQAPKKSKK 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0521 529 MobiDBLite consensus disorder prediction 374 402 - -
Dere02g0521 529 SUPERFAMILY Ribosomal protein L19 (L19e) 320 461 IPR035970 GO:0003735|GO:0005840|GO:0006412
Dere02g0521 529 MobiDBLite consensus disorder prediction 232 262 - -
Dere02g0521 529 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Dere02g0521 529 MobiDBLite consensus disorder prediction 276 299 - -
Dere02g0521 529 ProSitePatterns Ribosomal protein L19e signature. 324 343 IPR023638 -
Dere02g0521 529 Gene3D - 319 373 IPR015972 GO:0003735|GO:0005840|GO:0006412
Dere02g0521 529 MobiDBLite consensus disorder prediction 466 501 - -
Dere02g0521 529 CDD Ribosomal_L19e_E 321 484 IPR033935 GO:0003735|GO:0022625
Dere02g0521 529 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Dere02g0521 529 FunFam Ribosomal protein L19 374 511 - -
Dere02g0521 529 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Dere02g0521 529 Hamap 50S ribosomal protein L19e [rpl19e]. 320 466 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere02g0521 529 FunFam Ribosomal protein L19 318 373 - -
Dere02g0521 529 PANTHER 60S RIBOSOMAL PROTEIN L19 318 504 IPR039547 GO:0003723|GO:0003735|GO:0022625
Dere02g0521 529 Pfam Ribosomal protein L19e 321 462 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere02g0521 529 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Dere02g0521 529 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Dere02g0521 529 MobiDBLite consensus disorder prediction 512 529 - -
Dere02g0521 529 SMART Ribosomal_L19e_2 320 463 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere02g0521 529 MobiDBLite consensus disorder prediction 374 396 - -
Dere02g0521 529 Gene3D - 374 507 - -
Dere02g0521 529 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Dere02g0521 529 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Dere02g0521 529 MobiDBLite consensus disorder prediction 49 73 - -
Dere02g0521 529 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Dere02g0521 529 MobiDBLite consensus disorder prediction 466 529 - -
Dere02g0521 529 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0521 Dere-ChrDere02 5038679 5043478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0521 318 529 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.962 6.45e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere02g0521 Ribosomal_L19e 1.1e-63 No_clan