Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g0507 | ATGGATATTAAAGCAGAGAAAGTCTGCAGGGATTGCCACACAAGGACGACCCCACTATGGAGGGCTGGTCCAGATGGGCCAAGGTCTCTTTGTAATGCATGTGGACTACGATTCAGAAAGAGGAGGGCTCTTCTAGGCATGGATAGGGAAGGAGCACTGAAGCGCCGGAAGAGGATTCCGACAAGTAGAAGCATGAAGCAGTACAGATCAATTAGAAAGCAAAAGAAGTTAAAAGAAGAAGAAGAGGCGGCCATGTTACTGATGGCTCTTTCTTGTGGCTCTCTCTCTACTTAA | 294 | 0.4728 | MDIKAEKVCRDCHTRTTPLWRAGPDGPRSLCNACGLRFRKRRALLGMDREGALKRRKRIPTSRSMKQYRSIRKQKKLKEEEEAAMLLMALSCGSLST | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g0507 | 97 | Gene3D | - | 4 | 83 | IPR013088 | GO:0006355|GO:0008270 | |
| Dere02g0507 | 97 | CDD | ZnF_GATA | 8 | 58 | IPR000679 | GO:0006355|GO:0043565 | |
| Dere02g0507 | 97 | ProSiteProfiles | GATA-type zinc finger domain profile. | 3 | 63 | IPR000679 | GO:0006355|GO:0043565 | |
| Dere02g0507 | 97 | PANTHER | OS01G0976800 PROTEIN | 5 | 95 | - | - | |
| Dere02g0507 | 97 | Pfam | GATA zinc finger | 9 | 42 | IPR000679 | GO:0006355|GO:0043565 | |
| Dere02g0507 | 97 | ProSitePatterns | GATA-type zinc finger domain. | 9 | 34 | IPR000679 | GO:0006355|GO:0043565 | |
| Dere02g0507 | 97 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 49 | - | - | |
| Dere02g0507 | 97 | SMART | GATA_3 | 3 | 60 | IPR000679 | GO:0006355|GO:0043565 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g0507 | Dere-ChrDere02 | 4925081 | 4925471 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g0507 | 7 | 95 | C2C2-Gata Transcription Factor Family | AT5G49300 | 47.573 | 1.09e-20 | 78.6 |
Transcription factors information