Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0492 ATGTTGGAAACAAGTTATCCATCGCAAGTGTTTCTCGGTATTCATTTCGTTCTCTTTGGTTTTGATCCTGTCGGCGAAAGCAAGGTCCGATTCAAGCTTGTAAATGGCGGTGGAGTTGATGTTGGTCAGTACAGCCCAAGTTGCACACATGTCATTGTCGGCAAACTTGCATATGATGATCCTGTCTGTGTTGCCGCGAGAAGTGATGGGAAGACGCTTGTCAATGCGTTGTGGGTTGATCATAGTGCTGACATTGGAATGCCTGTTGATGCTGCCTCGGTTATGTACAGACCGCTAAAGGATTTAAAAGGTATACCGGGTGCCAAGAATTTGATTGTGTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAATTCTCTAAGCCATTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGGGAGAAGTATGAGCTTGCCAAGAGACTGAAGACAATTAAGTTAGTTAATCATCGGTGGTTGGAGGACTGTTTGAAGGATTGGGTGCTTCTCCCTGAAGATAAATATAAGAAGAGTGGTTATGAACTAGAGATGATGGCAGAAGAGGCTAAAGACTCTGAAGAAGAAGCAGAAGATCTCAAGCCAGGGCAATCTGGGGGAAGAAATATAAGTAAGAGTCCCTTTAATTCGAAAATTAATACTGCTACAGACCATAGCTTGTCAAAATCAGTAAGAGAGGCATCAAATGCCTTCCCAGCTCCTACTGATCCTGAGGGATTGTTGAAAGTGAATAAGAGTCATGACTCATTAGTTATTCCTGGATATGAGAACAGATCTGATCCAGCTGGAAGCTTTCATCACGATGCTCTAGAAATAAGTTGTGGGAATCCCGGTGTTTCTGCACATAATGCATCTGGTCAACCACCTGACACATTTGCTAAGACCACTAAACCTAGGAATACTGATGTTCCAAAGGCAGTTGATTGCCATGGTCTCAGCATTCTTGGGAATGCTAATTCATCTGATCATGTACCTGATCTGCAGACTGGCACTTCTGAGTTTGGGAAGTTGGTTAATGACTTGCAATTAACTTCTGAAAGTGCCGAAGGACTTGCATATTCAGATGCAAAGGGTATTGCTGTGAATAACTCGAGGAAAAACTTAGAGAGATTTTCTCCTCCAAAGAACTTATATGAAAACTCTGGCACTGTTAGTGGCCCATGTACATCACCTTCAAATGATTTGAAATTTAGTAACAACCCAGAAACCACTCCCAGCAAGGTGGAAATGGCAGGTGACAGAATCATCTCCAGTAAGAGAAATAATTTTATTAACAGGGGTGAGCCAATAAGTTTATTGCCTCAAAAGAGGACAATTGAAGCTTCTTCTACTAAATTTAAATTGAGGATGACTACTGATGCAAAATTGTCTAGTGAAAAAATCCCGTCAGCAAATGGTATTATTCAAGGAGTGAAACTCACATCTCTAATAGATGAACAGCCCGAGATTGAAGACCATTTTTCTGTTGGCAAAGATGGTATAAAGAACCCAGAAACTGTGGGCTTGAAGACTGTGCAATGTGATCAAGTGCCTAAAATTAATGACGAGCCTGATATTGCAGGTTTTGACACAGGAAAAGTTGCTCAAGATGGTAATGAAACAAAGCCAAATAATGCCAAGGAAAATCTTAAATGGTCATATCCGACTAACAAGAAGTCTCAGAATGTAGAATCAGCTAGTCTTACTACTCAGGACTTATGCAATAAAGTAAGTGATAAGTTGATTAGAAACTCACCCCGCAAGAAGACAGTTGCCAAGAAATGTCTGGGTTCTAGACGTAAATTAGGTGCTATTTCCAAACAAAATAAAAGTACCCTTCAAGGTGATGGTGCAAGTTTTTTAACTGGTTGCAATGAGACAGTACCTTGTGATGACAAAATGTTTCATACATCCTCTAAAATTGATGTTGAAGCATCATTGGAGCATCAAAATGCCAGTAAATCTGCAGAAAATGTTGGTGGCAGAGAATTTCTGGATGACGAAACAGAGGCTCCAGATGACAAATGTGATTACCAGGGAATGGCAATTGATGAAGAGAATTCTGAATTGGTTCATCTTTTGAAAAAAGCAGATACACTGATGGAAGAGAAATTGGAAGAAATTCACCATACATCAAAATGTGAAGAAACAGAGCCTTCAAAACAAAAGGAACTTAAGCTGGTAGACTCAACCTTAAAAGTAAAAGAAAAGCATAGAGGGAGAAAACTTACTGCAGGTAGAACCAAGAAGACCACAGTTGCCAGGCCTGAGGAGGCTGAATGCAGGGTAAAGATTGACAAGGAGAGGAAAGATGAGGCTGAGATGGAAACCATGAAAAAGTTGTCACTTCCTGTTGGTAAAAATGACAGCTCAGCTGCGTTAACAAATAGTTCAGAGAATTGTCTAGAAGTGGAGAAGGAAAACAGACCAATTGATGGAGAGAAGGACAACAGGGAGGGTATAAGCGTTGGAAATTCAGTTATTAAAGCTAGTTTATGTCCAGCAAAGATCAACCAAAAGACAGAGAAAAAGGCTCTTAATTCATCGATAATGGAAGAAGATAACAAAAGAGTGAAAAGAGAAGCTGCATGTTTTATAGTAAGTGGGCATCGCCTACAGAGGAAGGAGTTTCAACAAATAATTAGGCATTTGAAAGGACGGGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGATCCTATACGCAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGCCAGGCAGGTAAATTTTTGGTAGAAGAGCCTTATGAGTGGCACAAGAGCGGCCTTAGTGAGGATGGTTCAATCAATATGGAGGCTCCCAGAAGATGGCGGCTTTTGAAAGAGAGGACGGGTCATGGTGCCTTATATGGAATGCGCATTATTATCTATGGGGATTGCATTGCCCCAACTTTGGATACTCTGAAACGTGTAGTCAAAGCAGGAGATGGAACTATATTAGCAACTTCTCCTCCTTATACCCGCTTCCTTGACTCTGGAATCGACTATGCCATTGTTAGCCCAGGCATGCCACGTGTTGACTTGTGGGTCCAAGAGTTCTTAAAATATGAGATACCCTGTGTTTTAGCTGACTACTTGGTGGAGTATGTGTGTAAGCCTGGGTTCTCCCTTGAGAAACATGTACTATACGGAACTCATGCTTGGGCAGAGAGGTCATTTGCTAAACTTCAAAGTCGGTCGGAAGAGATTATCGACAATCCTCCAGAAAATGGTGATGATAATGATACGGCTTGCCAAGTATGTGGATCCCGAGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGCGGTTCCGTTGGTTGTGGGGTTGGCACCCATGTAGATTGCTGCGATCCTCCTCTCAAGGATGTTCCTGAGGAGGATTGGTTTTGTCCCGAGTGCAGTAAAACCCGAAACTGCTCTAAGTCTCCTAGGAAAAGGAAAAAAGGTGTCTTGTCTTCCTCGACGAGCAAGTGA 3591 0.4191 MLETSYPSQVFLGIHFVLFGFDPVGESKVRFKLVNGGGVDVGQYSPSCTHVIVGKLAYDDPVCVAARSDGKTLVNALWVDHSADIGMPVDAASVMYRPLKDLKGIPGAKNLIVCLTGYQRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLKTIKLVNHRWLEDCLKDWVLLPEDKYKKSGYELEMMAEEAKDSEEEAEDLKPGQSGGRNISKSPFNSKINTATDHSLSKSVREASNAFPAPTDPEGLLKVNKSHDSLVIPGYENRSDPAGSFHHDALEISCGNPGVSAHNASGQPPDTFAKTTKPRNTDVPKAVDCHGLSILGNANSSDHVPDLQTGTSEFGKLVNDLQLTSESAEGLAYSDAKGIAVNNSRKNLERFSPPKNLYENSGTVSGPCTSPSNDLKFSNNPETTPSKVEMAGDRIISSKRNNFINRGEPISLLPQKRTIEASSTKFKLRMTTDAKLSSEKIPSANGIIQGVKLTSLIDEQPEIEDHFSVGKDGIKNPETVGLKTVQCDQVPKINDEPDIAGFDTGKVAQDGNETKPNNAKENLKWSYPTNKKSQNVESASLTTQDLCNKVSDKLIRNSPRKKTVAKKCLGSRRKLGAISKQNKSTLQGDGASFLTGCNETVPCDDKMFHTSSKIDVEASLEHQNASKSAENVGGREFLDDETEAPDDKCDYQGMAIDEENSELVHLLKKADTLMEEKLEEIHHTSKCEETEPSKQKELKLVDSTLKVKEKHRGRKLTAGRTKKTTVARPEEAECRVKIDKERKDEAEMETMKKLSLPVGKNDSSAALTNSSENCLEVEKENRPIDGEKDNREGISVGNSVIKASLCPAKINQKTEKKALNSSIMEEDNKRVKREAACFIVSGHRLQRKEFQQIIRHLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDYLTACSQAGKFLVEEPYEWHKSGLSEDGSINMEAPRRWRLLKERTGHGALYGMRIIIYGDCIAPTLDTLKRVVKAGDGTILATSPPYTRFLDSGIDYAIVSPGMPRVDLWVQEFLKYEIPCVLADYLVEYVCKPGFSLEKHVLYGTHAWAERSFAKLQSRSEEIIDNPPENGDDNDTACQVCGSRDRGDVMLICGDESGSVGCGVGTHVDCCDPPLKDVPEEDWFCPECSKTRNCSKSPRKRKKGVLSSSTSK 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0492 1196 SUPERFAMILY BRCT domain 7 91 IPR036420 -
Dere02g0492 1196 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Dere02g0492 1196 MobiDBLite consensus disorder prediction 204 242 - -
Dere02g0492 1196 MobiDBLite consensus disorder prediction 221 242 - -
Dere02g0492 1196 ProSiteProfiles Zinc finger PHD-type profile. 1119 1175 IPR019787 -
Dere02g0492 1196 Pfam PHD-finger 1122 1174 IPR019787 -
Dere02g0492 1196 Pfam BRCA1 C Terminus (BRCT) domain 882 948 IPR001357 -
Dere02g0492 1196 MobiDBLite consensus disorder prediction 552 567 - -
Dere02g0492 1196 SMART BRCT_7 99 183 IPR001357 -
Dere02g0492 1196 SMART BRCT_7 873 952 IPR001357 -
Dere02g0492 1196 SMART BRCT_7 990 1077 IPR001357 -
Dere02g0492 1196 SMART BRCT_7 8 86 IPR001357 -
Dere02g0492 1196 SMART PHD_3 1121 1173 IPR001965 -
Dere02g0492 1196 SUPERFAMILY FYVE/PHD zinc finger 1113 1182 IPR011011 -
Dere02g0492 1196 Gene3D BRCT domain 990 1086 IPR036420 -
Dere02g0492 1196 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Dere02g0492 1196 ProSiteProfiles BRCT domain profile. 880 962 IPR001357 -
Dere02g0492 1196 MobiDBLite consensus disorder prediction 1175 1196 - -
Dere02g0492 1196 Pfam twin BRCT domain 111 175 IPR001357 -
Dere02g0492 1196 MobiDBLite consensus disorder prediction 392 414 - -
Dere02g0492 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1087 1188 IPR013083 -
Dere02g0492 1196 MobiDBLite consensus disorder prediction 537 567 - -
Dere02g0492 1196 Gene3D BRCT domain 99 222 IPR036420 -
Dere02g0492 1196 CDD BRCT_PAXIP1_rpt4 111 185 - -
Dere02g0492 1196 Gene3D BRCT domain 871 988 IPR036420 -
Dere02g0492 1196 Coils Coil 698 718 - -
Dere02g0492 1196 Gene3D BRCT domain 1 95 IPR036420 -
Dere02g0492 1196 CDD BRCT_TopBP1_rpt7 879 952 - -
Dere02g0492 1196 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 725 1187 IPR044254 -
Dere02g0492 1196 SUPERFAMILY BRCT domain 880 983 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0492 Dere-ChrDere02 4814552 4820602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0492 129 280 Core DNA Replication Machinery Family AT4G02110 53.896 1.06e-37 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere02g0492 BRCT 3e-07 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0492 02 4814552 4820602 Dere02g0492 02 4814552 4820602 ECH