Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0486 ATGGGTGAGGTCGTTATGTTTATTGAGGATTTGAAATCAATTTCTGGGATTTCTCGCTGCAGAATATGCCATGAAGAAGAATTTGAGAGCTCAAAAAGCATGGAAGCTCCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAATGAGAAAGGGAATACAATCTGTGAAATATGTCTCCAGCCATATGAACCTGGATACACAGCACCTCCGAAGAAACTAGAGATAAATGATGAAGCAATGACCATCCGAGATAGCCTGCAAATTTCAAGAATGGAGGAAGAAGCGTTGAATGCAAGATTAGAAGCTATAGTTGAAAGAGTAGCAATAGAAAGGGATTACTCTGAATGTTCGTCTGCCGCAGATAGAAGCGCATCGTACTGTCGATTGCTGGCTTTAGCATTTACACTCTTTATGCTTGTGAGACATCTTTTCGCTGTGCTCGCAAGTGGGGCAGAAGATTATCCATTTACACTTTTGACTGTTTTAATGCTAAGGGCCGGCGGAATTGTTCTACCCATGTTCATAATTATTAGGACAATCGGAGCCCTTCAAAACATTATTCAGCGCCACTATCAGGATTTTGAAAATAGCACATCGATGTCTGATGAATACGATGATGAAAATTGGCCACTGCGTGATGTGGTTTTTAGACACTCATAG 687 0.4148 MGEVVMFIEDLKSISGISRCRICHEEEFESSKSMEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQPYEPGYTAPPKKLEINDEAMTIRDSLQISRMEEEALNARLEAIVERVAIERDYSECSSAADRSASYCRLLALAFTLFMLVRHLFAVLASGAEDYPFTLLTVLMLRAGGIVLPMFIIIRTIGALQNIIQRHYQDFENSTSMSDEYDDENWPLRDVVFRHS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0486 228 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Dere02g0486 228 SUPERFAMILY RING/U-box 19 72 - -
Dere02g0486 228 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Dere02g0486 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 199 IPR033275 -
Dere02g0486 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 77 IPR013083 -
Dere02g0486 228 CDD RING_CH-C4HC3_MARCH 20 67 - -
Dere02g0486 228 SMART ringv_2 19 68 IPR011016 GO:0008270
Dere02g0486 228 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Dere02g0486 228 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0486 Dere-ChrDere02 4778707 4781001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0486 20 67 C3H Transcription Factor Family AT5G05830 40.385 1.12e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g3481 01 49269868 49272295 Dere02g0486 02 4778707 4781001 CCT
Dere02g0486 02 4778707 4781001 Dere02g0486 02 4778707 4781001 ECH