Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0484 ATGAATCCCTGCTTATCAATGTTCTTTAGGCCTTCATCTATTGTAATCCTTCTGGCATCTGTTGCGCTTATAGTTCCCATCTCAGTGACACCATGCTGGTATGTAATGCTAAAACATATCGAGCAGCGAGTGAACGCAAACTCACAAGTCTTTCTCTCTGAAATTCAATCTGAAATCGAGGACGCAGCTAAGCTTTTACGCCGTGTGAATTCGTCATCTATCAATATAGCAAGATTACTATCTGTAAACCTCAGTACTACAGTCTCCTTCTCTGACATTCAGACCAAGGTAGCTCCGGTACTATTTCAAGCATTCTCGACGGTGCCTCACTTGGCAGAAATCTCATACATTGGAATGGAAGGTCAATTTTTCTCATACTACACTGATCATGATCGAGCACTTGCAATGTACTCTAACGCTACTTCATCTGACTGGGCTTTGGGTGCTTCAAATGCAACCTTGTACTATATTCAACCTGTGAATCAAGACACAGGGAAATTATATGGGGAAGCCATAACATCTGAAGTAGGTCCCTCGATCAATACAAGTTGGATTGAAAAAGCAGTGAAAAGTAATTCCAATGGATGTGCCTCAATGGGAACCAAGTGGAGCAATGGTCGTGACCTCTTGTTCCTCAGTTCAGCAAAAGTCACAAGATCAGGAGTCATCTCTTTAGGGTTCCCAGCAGCATCTGTAACTGGTTTTATCACTCGTACAGCTCGTCAAGGCTCAAACATGGCTTTGGCTACCAAAGATGGAAAAGTGCTTGTACAAGAGATCCAGCACACCCATGTGGTCTTTTCTAATGACGAGGTTTTCTTTCAATTACTGAACCTAGATGGTGACCCATTAACTTTTGAGGCCATTACTGTCCCATGCAAGGATAAAGCTGTTACTTCTGTATTGAATATTCGGGGTACTCAGTATCTGCTTCACTGCTCCTCCATTGATATAATGGGCGTGGAATCGGTGTATGTTTTGGCTGTCCCGAATAACGGATTAGCGAGCTTTGTTCATAACAGTATAAAAGAGGGATTGAGGCTATTGATTGTAGCGATAGTGATGATAATTCTTTCTATGTCGAGCTTCCTAATTATAAATGGTAGAGTCGCTATGCGAGAGATGCATTTGCGTGCCTCACTGATGAAACAGATGGAGGCAACTCAACAGGCAGAGAGGAGAAGTATGAATAAGAACCTTGCCTTGGCTAGAGCCAGCCACGATGTTCGCGTCTCTCTCGCAGCCCTTACTGGTTTGATTGACATGTCCTACGATGAAGTTGTTCCTGGTTCAGAAATGGACAAGAATTTAAAACAAATGGATTCTTGTACCAAAGACTTACTAGGACTATTGAATTCTATACTTGATACAAGCAAAATTGAGGCAGGAAAAATGCAACTTGAGGAAGAAGAGTTTGATCTGTCACAACTTCTGGAAGATGTAGTTGATTTATTCCATCCCTTGGCTATGAAGAAAGGCGTAGATCTTGTATTGGACCCATGTGATGGTTCTCTTGTCAGATTTTCTCGCGTGAAAGGTGACAGAGGAAAGTTTAGGCAAGTTTTGTTAAATTTATTAAGCAACGCTGTCAAATTTACTGATGAGGGGCACATAGCAGTTCGGGCATGGGGTCAGAAGTCAAGCTTCCAGAACTCAATAACCGCTTCAAACCGTCACAGTTTCATGAAGCATTTATCATGTCTATTTTATAAGAGAAGTGAAATACAAAAAGACATAGAAGCAGTGAATGCAATCCAACATGACCCGGGTTTTATGGATTTTGTGTTTGAAGTGGATGACACTGGCAGAGGAATTCCTAAAGAGAAGCACAAATTTGTGTTCGAGAATTATGTTCAGGTCAAAGGAACTGCAGTCGGACAAGTAGGCACTGGCTTGGGACTTGGTATTGTGCAGTCGTTGGTACGTTTGATGCATGGAGATATAGGGATCGTAGACAAGGACATGGGAGAAAAGGGGACTTGCTTCAAGTTCAATGTCCTTCTTACTGTGTGTGAGAGATACACAGGTGGTGGTAGCACAAGAGAAGGTATTGACAGGCATCAAACCCTGCGACAAACCGTTCAAACTCCTAGATCTAGTCCTAGGCCAGGGGGTTCCTGTGTTGTTCTTTTGATTCAGTACGAGGAGCGTCTAAGGACTTTAAAGAAGTATATGGAGAGCTTAGGGATTGACGTTAAGGCTGTGAAGCAGTGGGAACATCTGGTTCATACTCTCAAAAAAATCAAGCAACAAGGGAGCCACTCCAGCGACAGTTCTCCAGATTTGAGTTATGGGTCTACGACTCAGAATTCTATTGCCAGAGCCAACAGAGTCCTCTCCGGTGCTATGGATGAAACTACGGCTACGGGTTTCGTTCTGATTGTCATTGATGCAAATGCAGGACCATTTGTAGAACTTTGCACAATCGTTTCAGACTTCAGAAGAGGTCTTCGCAGTCCTTGTAAGATTGTGTGGTTAAATAAGCCACTCATGCATAGTATAAATTTCAAAACCTGTGATTGGGATATGCTTGATCTTGATGACATGATCATATCCAAACCATTACATGGGACTCGTTTGTTTCAAGTTATAAAGCTTCTTCCCGAGTATAGGCAAAGCAGTTCGAGCAAAGGCAGAGCAAAGAGAGAAAGCGATGGACTCCCATTTCAAAGCGTTGAACAATTCAGGAAAGAAACCCAGGCATCTTCTGGAGATCAATCTTGCGTTAGGTACAGAGCTGAAGATTCTCCAGTTCATCGAGATGAAATTCAAGAATGTGATGACTCAAGCTTGAAAAAAGCATTGAGTGGCAAGAAATTTTTGCTTGTTGAGGACGGTGAATTGCCATGCAAGGTAGCTTTGCATGCTCTGAGACGGCTGGGTGCGACAGTTGAGCAATGCGAGAATGGTGAACAAGCTGTGAGGTTGGTTGAAAAGGGTCTAACAAGGGCTTTACCCACTCTTCCTTATGATTACATCTTAATAGACTGTGAGATGCCTGTAATGGACGGATTTGAGGCAACAAGACGGATAAGGGCGATAGAAAAGGCTTACGGCGTTCGCATTCCTATCATTGCATTAAGTGGTCATACGTCAGGGAAAGAGACAAGGATGACCACAGAGGCTGGAATGGACGAACATTTAGGCAAACCCATTAGCAAAGAGCATTTATTGGAAGCCATCAGATCCATTCATAGCAACAAAGAATGA 3210 0.4283 MNPCLSMFFRPSSIVILLASVALIVPISVTPCWYVMLKHIEQRVNANSQVFLSEIQSEIEDAAKLLRRVNSSSINIARLLSVNLSTTVSFSDIQTKVAPVLFQAFSTVPHLAEISYIGMEGQFFSYYTDHDRALAMYSNATSSDWALGASNATLYYIQPVNQDTGKLYGEAITSEVGPSINTSWIEKAVKSNSNGCASMGTKWSNGRDLLFLSSAKVTRSGVISLGFPAASVTGFITRTARQGSNMALATKDGKVLVQEIQHTHVVFSNDEVFFQLLNLDGDPLTFEAITVPCKDKAVTSVLNIRGTQYLLHCSSIDIMGVESVYVLAVPNNGLASFVHNSIKEGLRLLIVAIVMIILSMSSFLIINGRVAMREMHLRASLMKQMEATQQAERRSMNKNLALARASHDVRVSLAALTGLIDMSYDEVVPGSEMDKNLKQMDSCTKDLLGLLNSILDTSKIEAGKMQLEEEEFDLSQLLEDVVDLFHPLAMKKGVDLVLDPCDGSLVRFSRVKGDRGKFRQVLLNLLSNAVKFTDEGHIAVRAWGQKSSFQNSITASNRHSFMKHLSCLFYKRSEIQKDIEAVNAIQHDPGFMDFVFEVDDTGRGIPKEKHKFVFENYVQVKGTAVGQVGTGLGLGIVQSLVRLMHGDIGIVDKDMGEKGTCFKFNVLLTVCERYTGGGSTREGIDRHQTLRQTVQTPRSSPRPGGSCVVLLIQYEERLRTLKKYMESLGIDVKAVKQWEHLVHTLKKIKQQGSHSSDSSPDLSYGSTTQNSIARANRVLSGAMDETTATGFVLIVIDANAGPFVELCTIVSDFRRGLRSPCKIVWLNKPLMHSINFKTCDWDMLDLDDMIISKPLHGTRLFQVIKLLPEYRQSSSSKGRAKRESDGLPFQSVEQFRKETQASSGDQSCVRYRAEDSPVHRDEIQECDDSSLKKALSGKKFLLVEDGELPCKVALHALRRLGATVEQCENGEQAVRLVEKGLTRALPTLPYDYILIDCEMPVMDGFEATRRIRAIEKAYGVRIPIIALSGHTSGKETRMTTEAGMDEHLGKPISKEHLLEAIRSIHSNKE 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0484 1069 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 385 465 IPR036097 GO:0000155|GO:0007165
Dere02g0484 1069 SUPERFAMILY CheY-like 936 1066 IPR011006 -
Dere02g0484 1069 SMART REC_2 938 1061 IPR001789 GO:0000160
Dere02g0484 1069 Gene3D - 465 675 IPR036890 -
Dere02g0484 1069 Gene3D - 917 1069 - -
Dere02g0484 1069 SMART HKATPase_4 513 670 IPR003594 -
Dere02g0484 1069 SMART HisKA_10 397 463 IPR003661 GO:0000155|GO:0007165
Dere02g0484 1069 Coils Coil 52 72 - -
Dere02g0484 1069 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310|GO:0016772
Dere02g0484 1069 PRINTS Bacterial sensor protein C-terminal signature 628 646 IPR004358 GO:0016310|GO:0016772
Dere02g0484 1069 CDD REC_hyHK_CKI1_RcsC-like 940 1061 - -
Dere02g0484 1069 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 513 668 IPR003594 -
Dere02g0484 1069 Pfam Response regulator receiver domain 941 1062 IPR001789 GO:0000160
Dere02g0484 1069 Gene3D - 384 464 - -
Dere02g0484 1069 CDD HisKA 398 459 IPR003661 GO:0000155|GO:0007165
Dere02g0484 1069 ProSiteProfiles Response regulatory domain profile. 939 1065 IPR001789 GO:0000160
Dere02g0484 1069 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 452 665 IPR036890 -
Dere02g0484 1069 ProSiteProfiles Histidine kinase domain profile. 404 670 IPR005467 -
Dere02g0484 1069 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0484 Dere-ChrDere02 4762827 4767106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0484 10 1068 Histidine Kinase Gene Family AT2G47430 38.816 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere02g0484 HATPase_c 7.2e-25 CL0025