Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere02g0483 | ATGGGATGCGACTTTAGTCGATTGAGTGTTCCATTCTATTCTTATATTTGGTATTGGAATAAAGCAATAGCGGTTTAAAACGTCAAGATTCTTGAACTGGGCACCATGATAGCACCTAGTGGCTGTAGTTTAGTGGTAACTCGTCTTTTTCTGCCCCTTCCCGCCAAAAGGCCATCTCGTTTAGTATTTGGCGCCAAAATCCGCCAAATCAAACTTACTCACAGTTCCGTTGGTATCCGACTATCGCCGTCTCTTGTGTCGTCTTCGCCGAGTTTCACTATGAAGGACCTGGACTTCAATTCAGACAAAGTTCTCGCGAAGGAGTTCCTTTCGAACTTCGCAGATGCAAATGGTGAAGCCAAATACATAAACATTCTGCAAGATGTTGCAAACCACAAAACTCAAGCAATCCAGATCGATCTTATGGACTTAATTAATTACAAAGATTTAAATGAAGAATTTCTCAGGCGTGTTACTGAAAATACTCGGAGGTATATTGGAATTTTCGCTGATGCAATCGATGAGCTCATGCCAGAGCCCACGGAGGCTTTCACGGACGATGATCATGACATCTTGATGACACAGAGGTCTGACGAAGGAGTGGAAGGTGCCGATGGTTCAGACCCACTTCAGAAGATGCCTTCGGAGATCAAGCGCTACTTTGAAGTTTATATAAGAGCACCTTCAAAAGGACGGCCATTTACTATTAGGGAGGTGAAGGCTTCACACATCGGTCAGCTTGTGAGGATATCTGGTATTGTTACTCGTTGTTCAGACGTTAAACCGTTGATGCAGGTGGCTGTTTACACATGTGAGGATTGCGGTTTTGAAATTTACCAGGAAGTAACGGCTCGAGTTTTCATGCCATTGTTCGAGTGTCCATCTAAGCGTTGTGATACAAACAGAAATAAGGGGAACCTCATCCTTCAATTAAGAGCATCGAAGTTTTTGAAATTCCAGGAGGCAAAAATTCAAGAATTAGCTGAACATGTTCCAAAAGGCCATATTCCACGAACAATGACTGTTCATTTTAGGGGAGAGCTCACAAGAAAGGTAGCTCCAGGTGATGTGGTTGAATTATCGGGAGTTTTTCTTCCTATACCTTACACTGGCTATAGAGCAATGCGTGCTGGCCTAGTTGCTGATACTTACCTAGAGGCCATGTCTGTGACCCATTTCAAGAAAAGATATGACGAATATGAGCTCAGAGGAGATGATGAAGAGCAGATAATCCGTTTAGCAGAAGATGGTGATATCTACAACAAGTTGGCACGTTCTCTAGCTCCTGAAATTTTTGGACACGAAGATATAAAAAAGGCACTGCTTCTTCTTCTCGTTGGTGCTCCCCATCGGAAGTTGAAAGATGGGATGAAGATAAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCAAAGAGTCAGCTCCTTAAACATATAATCAATGTTGCGCCCAGAGGGGTGTACACCACTGGCAAAGGAAGTAGTGGAGTTGGTCTAACCGCTGCTGTTCAGAAAGACCCAGTAACAAACGAGATGGTTCTAGAAGGCGGAGCATTGGTTCTAGCAGATATGGGCATATGCGCCATAGATGAGTTTGATAAGATGGATGAATCAGATCGTACTGCTATACATGAAGTTATGGAGCAGCAAACTGTTAGTATCGCCAAAGCTGGGATTACCACTTCACTGAATGCAAGGACTGCTGTCCTCGCTGCAGCTAATCCAGCATGGGGAAGATACGATTTACGAAGAACTCCAGCTGAAAATATCAATCTTCCTCCTGCTCTTCTATCAAGATTTGATCTGCTGTGGTTAATCCTTGATCGGGCTGATATGGATTGTGATCTTGAAATGGCTAGGCATGTCGTCTATGTGCATCAAAACAAAGAATCGCCTGCTCTGGGATTCACTCCTCTTGAACCATCTGTTCTCCGTGCATATATATCGGCTGCAAGAAGATTATCTCCTAGTGTCCCTAGGGAACTGGAAGAGTATATCTCGAGTGCATACTCTAGCATTCGGCAAGAAGAAGCCAAGTCTAACTCTCCCCATTCCTATACAACGGTTAGAACGTTGCTCAGCATTCTCCGCATATCAGCAGCGCTAGCAAGACTCCGTTTTTCTGAAACTGTTGGTCAGAGTGATGTGGATGAGGCACTGAGGTTAATGCAGATGTCGAAGTTCTCTTTGTACTCTGATGAGCGTCAAAGCTCTGGCCTGGATGCTATATCTGACATCTACGCTATACTGCGAGATGAAGCTGCCAGGAGTAATAAGATGGATGTAAGCTATGCCCACGCACTCAATTGGATATCTAGGAAGGGGTACAGTGAAGCCCAATTGAAAGAGTGTTTGGAGGAGTATGCAGCATTAAACGTATGGCAAATACATCCTCACACCTTTGATATACGATTTATCGATGCTTGA | 2436 | 0.4384 | MGCDFSRLSVPFYSYIWYWNKAIAVXNVKILELGTMIAPSGCSLVVTRLFLPLPAKRPSRLVFGAKIRQIKLTHSSVGIRLSPSLVSSSPSFTMKDLDFNSDKVLAKEFLSNFADANGEAKYINILQDVANHKTQAIQIDLMDLINYKDLNEEFLRRVTENTRRYIGIFADAIDELMPEPTEAFTDDDHDILMTQRSDEGVEGADGSDPLQKMPSEIKRYFEVYIRAPSKGRPFTIREVKASHIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSKRCDTNRNKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGVFLPIPYTGYRAMRAGLVADTYLEAMSVTHFKKRYDEYELRGDDEEQIIRLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDCDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRLSPSVPRELEEYISSAYSSIRQEEAKSNSPHSYTTVRTLLSILRISAALARLRFSETVGQSDVDEALRLMQMSKFSLYSDERQSSGLDAISDIYAILRDEAARSNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA | 811 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere02g0483 | 811 | Pfam | MCM N-terminal domain | 107 | 225 | IPR027925 | - | |
| Dere02g0483 | 811 | FunFam | DNA replication licensing factor MCM7 | 263 | 317 | - | - | |
| Dere02g0483 | 811 | ProSitePatterns | MCM family signature. | 528 | 536 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Dere02g0483 | 811 | CDD | MCM7 | 422 | 729 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Dere02g0483 | 811 | Gene3D | - | 404 | 736 | IPR027417 | - | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 520 | 534 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 599 | 607 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 460 | 475 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 548 | 561 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 572 | 584 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | SUPERFAMILY | Nucleic acid-binding proteins | 106 | 387 | IPR012340 | - | |
| Dere02g0483 | 811 | Gene3D | - | 102 | 194 | - | - | |
| Dere02g0483 | 811 | ProSiteProfiles | MCM family domain profile. | 419 | 625 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | Pfam | MCM OB domain | 236 | 366 | IPR033762 | - | |
| Dere02g0483 | 811 | Pfam | MCM AAA-lid domain | 646 | 729 | IPR041562 | - | |
| Dere02g0483 | 811 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 107 | 741 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | Gene3D | - | 263 | 317 | - | - | |
| Dere02g0483 | 811 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 429 | 737 | IPR027417 | - | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 286 | 298 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 251 | 262 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 378 | 388 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 213 | 225 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Dere02g0483 | 811 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 269 | 280 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Dere02g0483 | 811 | Pfam | MCM P-loop domain | 406 | 629 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | Gene3D | - | 236 | 364 | IPR012340 | - | |
| Dere02g0483 | 811 | SMART | mcm | 232 | 731 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Dere02g0483 | 811 | FunFam | DNA replication licensing factor MCM7 | 404 | 736 | - | - | |
| Dere02g0483 | 811 | FunFam | DNA replication licensing factor MCM7 | 102 | 193 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere02g0483 | Dere-ChrDere02 | 4753258 | 4762218 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere02g0483 | 94 | 809 | Core DNA Replication Machinery Family | AT4G02060 | 84.916 | 0.0 | 1277 |