Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0450 ATGTGTGTGGAAGAAGATATAGGTGGCTTACCGGCGCATGGCCAAATCGAGCATCGGAAAGGCGAAAGCTCTTTACTTTCCTCTTCCTGTGGCCGTTGCCTGCTGTCCCTACTGTTTCTTGGTTCCGTCTCCTTCAGCAAGCATATCGTCAATAGGGTGAAGTGTTTCTGTATTTCGCAGTTTACAAAGCTGGAGAATCATAACAACCACCCGGATCAAAGAGTCACCGGAAACGGTCTCCCCCATCACCCTCATGTTCACCCAATACTCCCTCATACCCATGAACAGCTTTTCAACCATTGCAACTTTCAGCTGCCGAACGGCCAGGATAACCACCACTCCGGTAACTTCACTTACACCCATGTCCCTGGAAATGGCTTCGCTCACCCTAACCAACCTTACAATCACTACAACCACATGAACGGCGAGTCAAACACTTCATTCGGTAGCGGAGGACCTCCCTCTACCAATGGTGACTGTGGATATGGTTTTAACCATTCCATGCCTCGTCCTGGGCGGAAACGAGGTTGGCATCTCTCTAACCAAGGAACTTCCCCAGATCAAGTTGATGGTGCATATAATGTGAAACTTTATGTTGCCCCAGTTCCAAGAACATCAACAGAAGCTGATATCCGCCTCGTGTTTGAAGGACATGGAACTATTGTTGAAGTTGTTCTTTTAAGGGATAAGAGAACTGGTGAACGACAAGGAAGCTGTTTTGTGAAATTTGCAACATTAGATGAAGCTGACAGGGCTATCAAAGCTTTAAGCAATCGATATATTTTTCCCGGGGAATCATCGCCCATCGTTGTCAGATTTGCTGATCGAGAACGTGAACGTCTTGGGATTCGAGGGTTCTCCCAAAACATGGATAAAAAAAATCCTTTAGAAGAGGTTGTAGACAAAGTGTTTGTTGGTTTCATCAACAAAGAAGCTTCAAAGAAAGACATTGAAGAAGTATTTTCCCCTTATGGACATGTGGAGGATATCTTCATTGCACAAAGTCGCGGATATTGTTTTGTCAAATTTTCAAATAGAGATATGGCTTTGGCAGCTATCAAAGGGCTGAACAATACCTTCACAATGAGGGGTTGTGATCATCCGTTAGTTGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGAGAACCCAGGGTCAATTATATGCCTGGGAGTGCATTGGGCCCGTGTTCTCAAGAACCAGCGGTCTGGCCACTTCCGAACTTTGGTGATTCCATGGGTGGAAGTAATCTGCCTGTGGCCCCACATCATTCCACAATTCCTCACTCACAAGTTGCTCCTCATACTCAAAACTGGGAATCTGCTAATACACTGGTGCAACAACCATTTCCTTCCCAACAAGCACATGCACAATTGGCTCCAACATCCTTACAGCCGACTCAAGTGCAAAAGTTTTCTTCTCAACCAGTAATTACTGATGTGCAGAAGCAGTCTCAGCAAACTGATTCATCAGCTCAAAATATAGAGCAGCGACTAAGTTCACAGCCTTCCCAGAATGGAAGCAATCCGTGTGCTGTTGCTGGCGGTACCTCACCAGATATGCCAGAAAGTCCTGAAGAAGAAGTTTTTCCAGAATGTGACTGGAGCGAACACACCTGCCCTGACGGTTATAAGTACTACTACAATTGTGTGACTTGTGAAAGCAAGTGGGAGAAGCCTGAGGAATATACCTTGTATGAGAACGAATTACAAAAGCAGCAAGAGCAGGAAGATCGTGGCTGTCTAAATTCACAATTGAAGTTATCTTCCTAA 1773 0.4523 MCVEEDIGGLPAHGQIEHRKGESSLLSSSCGRCLLSLLFLGSVSFSKHIVNRVKCFCISQFTKLENHNNHPDQRVTGNGLPHHPHVHPILPHTHEQLFNHCNFQLPNGQDNHHSGNFTYTHVPGNGFAHPNQPYNHYNHMNGESNTSFGSGGPPSTNGDCGYGFNHSMPRPGRKRGWHLSNQGTSPDQVDGAYNVKLYVAPVPRTSTEADIRLVFEGHGTIVEVVLLRDKRTGERQGSCFVKFATLDEADRAIKALSNRYIFPGESSPIVVRFADRERERLGIRGFSQNMDKKNPLEEVVDKVFVGFINKEASKKDIEEVFSPYGHVEDIFIAQSRGYCFVKFSNRDMALAAIKGLNNTFTMRGCDHPLVVRFADPKKPKTGEPRVNYMPGSALGPCSQEPAVWPLPNFGDSMGGSNLPVAPHHSTIPHSQVAPHTQNWESANTLVQQPFPSQQAHAQLAPTSLQPTQVQKFSSQPVITDVQKQSQQTDSSAQNIEQRLSSQPSQNGSNPCAVAGGTSPDMPESPEEEVFPECDWSEHTCPDGYKYYYNCVTCESKWEKPEEYTLYENELQKQQEQEDRGCLNSQLKLSS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0450 590 CDD WW 533 562 IPR001202 GO:0005515
Dere02g0450 590 MobiDBLite consensus disorder prediction 452 513 - -
Dere02g0450 590 SUPERFAMILY RNA-binding domain, RBD 298 382 IPR035979 GO:0003676
Dere02g0450 590 SUPERFAMILY WW domain 534 566 IPR036020 GO:0005515
Dere02g0450 590 MobiDBLite consensus disorder prediction 452 528 - -
Dere02g0450 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 276 IPR000504 GO:0003723
Dere02g0450 590 MobiDBLite consensus disorder prediction 571 590 - -
Dere02g0450 590 PANTHER RNA BINDING PROTEIN 120 544 - -
Dere02g0450 590 SMART ww_5 530 562 IPR001202 GO:0005515
Dere02g0450 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 361 IPR000504 GO:0003723
Dere02g0450 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 261 IPR000504 GO:0003723
Dere02g0450 590 ProSiteProfiles WW/rsp5/WWP domain profile. 535 562 IPR001202 GO:0005515
Dere02g0450 590 SUPERFAMILY RNA-binding domain, RBD 175 285 IPR035979 GO:0003676
Dere02g0450 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 376 IPR000504 GO:0003723
Dere02g0450 590 Gene3D - 288 382 IPR012677 -
Dere02g0450 590 SMART rrm1_1 302 372 IPR000504 GO:0003723
Dere02g0450 590 SMART rrm1_1 196 272 IPR000504 GO:0003723
Dere02g0450 590 Gene3D - 531 578 - -
Dere02g0450 590 Pfam WW domain 533 560 IPR001202 GO:0005515
Dere02g0450 590 Gene3D - 185 281 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0450 Dere-ChrDere02 4500363 4508759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0450 197 405 Eukaryotic Initiation Factors Gene Family AT4G34110 26.577 2.08e-10 61.6