Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0445 ATGGATCACCGGGTGATTGATTCCCAGATGAATATGGAGTACAGGGGTGTTGAGACGATGAGAAGCTTATCAGACTGTGGGTCATCGGCAACGTATGGAAGTGAAGAAGAGATGGGAATAAGGAAAGGGCCATGGACAGAGGAAGAGGATACTATTCTGGCCAACTACATCTCCGTCCATGGTGAAGGAAACTGGAACTCCCTGGCCCGCTCTGCAGGTCTAAAGCGAACGGGGAAAAGCTGCAGATTAAGATGGTTAAACTACCTGCGCCCAAATGTACGGCGTGGTAATATCACCCTCCAAGAACAGCTCTTAATTCTTGATCTCCATTCCCGATGGGGCAATAGGTGGTCCAAAATAGCACAAGAGTTGCCCGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCGAGTGGTGAAGCAGGCCAAGCAACTGAAATGCGACGTGAATAGCAAACAGTTCAGAGACGCCCTGCGTTTCGTATGGATTCCCCGCTTGCTGGAGCGCATCCAAGCCTCCTCTCGAACCGCATCACCTCATTCATCAGTGCTTCACATGGAAGCTCCTTCTCTCTGTTTCGACTCAATGATGATGGGCCATGATAGAACTGCAGCAAAAGAATCAAGCTCGGGGAATCACAATATGGAATATTCGGAAGAAATCCAAGCATATGAAGCAGGCAATGCTGACTTGTGGACTCATGAAAACATATGCTTCTTGCAGCAACAGCTTGCCGATGACTTTTGA 753 0.4821 MDHRVIDSQMNMEYRGVETMRSLSDCGSSATYGSEEEMGIRKGPWTEEEDTILANYISVHGEGNWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAQELPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDALRFVWIPRLLERIQASSRTASPHSSVLHMEAPSLCFDSMMMGHDRTAAKESSSGNHNMEYSEEIQAYEAGNADLWTHENICFLQQQLADDF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0445 250 CDD SANT 99 138 IPR001005 -
Dere02g0445 250 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 37 217 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dere02g0445 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 93 IPR017930 -
Dere02g0445 250 ProSiteProfiles Myb-like domain profile. 37 89 IPR001005 -
Dere02g0445 250 SUPERFAMILY Homeodomain-like 38 136 IPR009057 -
Dere02g0445 250 Gene3D - 42 94 - -
Dere02g0445 250 CDD SANT 44 89 IPR001005 -
Dere02g0445 250 Gene3D - 99 140 - -
Dere02g0445 250 FunFam Myb transcription factor 42 94 - -
Dere02g0445 250 SMART sant 41 91 IPR001005 -
Dere02g0445 250 SMART sant 94 142 IPR001005 -
Dere02g0445 250 FunFam MYB transcription factor 99 162 - -
Dere02g0445 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 144 IPR017930 -
Dere02g0445 250 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Dere02g0445 250 Pfam Myb-like DNA-binding domain 42 89 IPR001005 -
Dere02g0445 250 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0445 Dere-ChrDere02 4380038 4380973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0445 35 176 MYB Transcription Factor Family AT2G47190 74.648 1.69e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere02g0445 Myb_DNA-binding 1.1e-15 CL0123