LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere02g0444	ATGGAAAATAAGGTGAAAGGCGGGTGTAAAACACAGCAGAGTGAAGATGAGATGGGGATAAGGAAAGGTCCATGGACTGTCGAAGAGGACACTATTCTCGTCAATTATATCGCCACCCACGGCGAAGGTCGCTGGAATTCCATCGCCCGCTGTGCAGGTTTGAAAAGAACAGGCAAAAGTTGCAGACTAAGATGGCTAAACTACTTGCGTCCCGATGTTCGGCGGGGAAATATCACACTACAAGAACAGATATTGATTCTTGATCTCCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCGCAGCACTTGCCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAGGACGAGAGTGATGAAGCAGGCGAAGCAGCTCAAGTGTGACGTTAACAGCAAGCAGTTCAGAGACGCCATGCGTTACGTGTGGATGCCCCGCTTGCTGGAACGGATACGGGCGGCCGCATCCGAATACAACCCGACCTGCCAACCCACCGGATCCACTCCCAGTTCGGCAACCGGGTGGGTCGACCCAAATCGCTCCTCCGCCACGCTTCTCAATTTGGACCACGGCCAGTCTTCTCCATCACTGAGTCAGCAAGTTTCGGAAAGTCAGGAGAACGGGTCGGATTTTTGCCCACGGGTTGTCGGATTGGACTTGGAGAATGGGAATGCCGTGGGCGGTGGTGGCGGGGAGTGGCTTGAGAGTTTGTGGAACGACGAGAATGTTTGGTTTTTGCGACAACAACTTTTCGAAGATCTCTGA	768	0.5208	MENKVKGGCKTQQSEDEMGIRKGPWTVEEDTILVNYIATHGEGRWNSIARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVMKQAKQLKCDVNSKQFRDAMRYVWMPRLLERIRAAASEYNPTCQPTGSTPSSATGWVDPNRSSATLLNLDHGQSSPSLSQQVSESQENGSDFCPRVVGLDLENGNAVGGGGGEWLESLWNDENVWFLRQQLFEDL	255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere02g0444	255	MobiDBLite	consensus disorder prediction	190	209	-	-
	Dere02g0444	255	CDD	SANT	24	69	IPR001005	-
	Dere02g0444	255	SUPERFAMILY	Homeodomain-like	18	116	IPR009057	-
	Dere02g0444	255	SMART	sant	74	122	IPR001005	-
	Dere02g0444	255	SMART	sant	21	71	IPR001005	-
	Dere02g0444	255	FunFam	Myb transcription factor	22	74	-	-
	Dere02g0444	255	Gene3D	-	78	142	-	-
	Dere02g0444	255	Pfam	Myb-like DNA-binding domain	22	69	IPR001005	-
	Dere02g0444	255	Pfam	Myb-like DNA-binding domain	75	118	IPR001005	-
	Dere02g0444	255	ProSiteProfiles	Myb-like domain profile.	17	69	IPR001005	-
	Dere02g0444	255	ProSiteProfiles	Myb-like domain profile.	70	120	IPR001005	-
	Dere02g0444	255	Gene3D	-	23	74	-	-
	Dere02g0444	255	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	17	73	IPR017930	-
	Dere02g0444	255	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	18	206	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Dere02g0444	255	FunFam	MYB transcription factor	79	142	-	-
	Dere02g0444	255	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	124	IPR017930	-
	Dere02g0444	255	CDD	SANT	79	118	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere02g0444	Dere-ChrDere02	4372143	4373186	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere02g0444	1	254	MYB Transcription Factor Family	AT2G47190	49.630	1.57e-81	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere02g0444		Myb_DNA-binding	5.2e-17	CL0123