Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0432 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCTTAGAGGTTGAATCGTCAGATACAATAGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAACGACTCATCTTCGCCGGCAAGCAACTCGAGGATGGGCGAACCCTTGCTGACTACAACATCCAGAAGGAATCCACCCTTCACCTTGTTCTTCGCCTCCGTGGTGGTGCCAAGAAGCGTAAGAAGAAGACCTACACAAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTGAAGCTCGCCGTCCTACAGTTTTACAAGGTCGATGATTCTGGGAAGGTTCAGAGGTTGAGGAAGGAGTGCCCCAATGCTGAATGCGGAGCTGGCACCTTTATGGCCAATCACTTTGACAGGCACTATTGTGACGCTTTAGTCACCCTGAGGGTTGAGATGGAACTTCAGAATGTTATAGAAACTTTGAAGAAAGCAATGGAGCTGAGGTCCGGTTTGAGGGGGCCGCCTGAAAGTTCATCACAGAAACACGAAGCTGAAACAAAGTGA 561 0.4884 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCDALVTLRVEMELQNVIETLKKAMELRSGLRGPPESSSQKHEAETK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0432 186 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Dere02g0432 186 SMART ubq_7 1 72 IPR000626 GO:0005515
Dere02g0432 186 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere02g0432 186 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Dere02g0432 186 Pfam Ribosomal protein S27a 102 141 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere02g0432 186 PRINTS Ubiquitin signature 53 74 IPR019956 -
Dere02g0432 186 PRINTS Ubiquitin signature 32 52 IPR019956 -
Dere02g0432 186 PRINTS Ubiquitin signature 11 31 IPR019956 -
Dere02g0432 186 SUPERFAMILY Zn-binding ribosomal proteins 100 141 IPR011332 GO:0006412
Dere02g0432 186 CDD Ubl_ubiquitin 1 76 - -
Dere02g0432 186 Gene3D - 81 151 IPR038582 -
Dere02g0432 186 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Dere02g0432 186 PANTHER UBIQUITIN 1 89 - -
Dere02g0432 186 Gene3D - 1 80 - -
Dere02g0432 186 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Dere02g0432 186 MobiDBLite consensus disorder prediction 167 186 - -
Dere02g0432 186 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0432 Dere-ChrDere02 4278345 4280483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0432 1 149 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 89.933 1.68e-83 242