Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g0426 ATGGAAGCTAGATTTGGGGCGGAAGCCTTTCAATTCTATGGTATGAGCTCTTCGGATTTGCGGGCCGTGGGGAAGAGGTCCCTGGAGTGGGATTTGAATGATTGGAAATGGGACGGAGACCTTTTCATGGCTAGTCCGCTGAATCCAGTGCCAACCAATACGGTTGGCCAACAATTTTTCCCTCTTCGGTCGGGGATCCCTGCGGTTGGGTCCTCCAATAGTTCATCGTCCTGTTCTCAAGAAGTAGATCTTGATACTGGCAAGGGAAAGAAAGAAGGAGAAAGGAAAAGGAGGGTTATTTTGATGGAGGATGACAGCTTGAATGAGGAAGCAGGTAACCTTAGCTTAAAGCTTGGTGGACATGGTTCTCCAATTGCTGATAGGGAGATAGCAAGTTTGGAAGAAATGAAAGGTAAGAAAAGCAGGGTGTCTGGAGGAACTTCAAATCGAGCTGTTTGTCAGGTGGAAGACTGCAGTGCAGATCTGAGCCATGCTAAGGATTATCATCGCCGTCATAAAGTTTGCGAGATGCACTCAAAGGCCAGTAGGGCACTTGTGGGGAATGTAATGCAGCGGTTCTGTCAACAATGTAGTAGGTTTCACATGCTTCAAGAATTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTAGCAGGCCATAACAAACGAAGGAGGAAAAGAAATCATGACGCTGTTCCTAATGGAAGTTCACTAAATGATGATCAGACTAGTAGTTATCTGTTGATTAGTTTACTGAAGATTCTTTCAAATATGCATTCTAACAGGTCAGATCAGGCCACAGAGCAGGATCTGCTATCTCATCTTCTCAGGAGCCTTGCTAATCAAAATGGTGAACGAGGCAGCAAGAACTTATCTAACCTTTTGCGGGAACCAGAGAGTTTGTTGAAAGAAGGGAGTTTTTCTGGGAAGTCAGAGATGGTTTCTCCTTTATTCTCAAATGGTTCTCAAGGCTCTCTGACTGCTATAAGACAACAGCAGACATTATCTTCTGAAATGCAGCATCAAGTGATGCATGCACATGATGCCGGTGTTGCTGAGCAACTAACTCTGTCCTCTACAAAACCTAGCATTTCAAACAGTCCTCCATCTTACTCAGAAGCCAGAGACAGTGCTGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGATTCTGATGGCATGGAAGATATAGAAAGATTGCCTGTCGCTGCAAATCTTGGGATTAGCTCTCTTAATTACCCATGGACACAAGATTCCCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGTGTCTACCCAGTCCCCTTCAAGTTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAGGAACCAAATGATTTTCCTCTTGTACTTAGAACACAGATTCTTGACTGGTTATCCCACAGTCCTACTGACATTGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCATCAGGCTGAGGCTGTGTGGGAGGAACTTTGCTATGATCTGACATCCAGTATGAATAGGCTTCTAGATGTCTCAGATGATGCTTTTTGGAGGACAGGATGGGTTCACATTAGGGTGCAGCATCAGATTGCCTTCATTTTTAATGGTCAAGTTGTCATAGATACATCCTTACCTTTTAGAAGTAACAATTATAGTAAGATATTGAGTGTCAGTCCTATTGCTGTACCAGCATTAGCAAGAGCTCAATTTTCAGTTAAGGGTATTAACCTGAATCGCCCTGCCACGAGGTTATTATGTGCTCTAGAAGGGAAATATCTGGCCTGTGAAGATGCTCATGAGTCAATGGATCAGTGCTCTAAAGAGCATGATGAGCTCCAGTGTGTCCAGTTTTCATGTTCTGTTCCTGTGATGCTTGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGCAGCAGCTTTTATCCTTTCATAGTTGCAGAGGAGGATGTTTGCTCGGAAATCTGTGTGCTTGAGCCTCTACTAGAATCAACTGTGATTGATCCAGATATTGAAGGAGCTGGAAAATTCAAAGCCAAAAGTGAAGCCATGGATTTCATTCATGAAATGGGCTGGCTTCTCCACAGAAGCCGATTGAAATCCAGGCTGGTTCACTTGAACACTAGTGCCGAGGCTTTTCCATTAAAACGGTTTAAGTGGCTCATGGATTTCTCTTTGGACCATGATTGGTGTGCAGTAGTGAAGAAACTATTGAACCTACTACTTGATGGAACTGTGGATTCAGGAGATTACGCTTCCCTGTATCTTGCAATTTCAGATATGGGTCTCCTTCATCGAGCTGTGAGGAGAAATAGCAGGCAGTTGGTGGAGCTGCTTTTGAGATATGTTCCTGAGAATAGGCCTATTAAACTAGGGCCTGAAGATGAGGCACTGGTTGATGAAGGGAATTTGAGCTTTTTGTTTAGACCTGATGTTGTTGGTCCTGCAGGTTTGACACCACTCCACATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTAGATGCTTTAACTAATGATCCTTGCATGGTTGGCATTGAAGCATGGAAGAGTGCCCGTGACAGCACAGGCTCCACACCAGAGGATTATGCACGTTTACGTGGCCATTATACTTACATTCACCTGGTGCAGAAGAAAATTTACAAGAGACAAGCAGCAGCTCATGTTGTGGTTGAGATTCCTTGCAATTCAACTGACTGCAGTACAGACCAGAAGCAAATTGGGTCGTCCACTTCCTTTGAGATTGGAAAGGCTGAACAAAGATCTATCCAGGGGCACTGCAAACTGTGTGATCACAAATTGTCATGTAGAGCTGTAGTGGGCAGGTCTTTGGTGTACAAACCTGCAATGCTCTCAATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCTCTTCTGTTTAAAAGCTCACCGGAAGTTCTCTATGTGTTCCGACCCTTCAGGTGGGAATCGTTAGATTTTGGAACAAGCTGA 3024 0.4401 MEARFGAEAFQFYGMSSSDLRAVGKRSLEWDLNDWKWDGDLFMASPLNPVPTNTVGQQFFPLRSGIPAVGSSNSSSSCSQEVDLDTGKGKKEGERKRRVILMEDDSLNEEAGNLSLKLGGHGSPIADREIASLEEMKGKKSRVSGGTSNRAVCQVEDCSADLSHAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKRNHDAVPNGSSLNDDQTSSYLLISLLKILSNMHSNRSDQATEQDLLSHLLRSLANQNGERGSKNLSNLLREPESLLKEGSFSGKSEMVSPLFSNGSQGSLTAIRQQQTLSSEMQHQVMHAHDAGVAEQLTLSSTKPSISNSPPSYSEARDSAAGQIKMNNFDLNDIYIDSDGMEDIERLPVAANLGISSLNYPWTQDSHQSSPPQTSGNSDSVSTQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRTQILDWLSHSPTDIESYIRPGCIVLTIYLHQAEAVWEELCYDLTSSMNRLLDVSDDAFWRTGWVHIRVQHQIAFIFNGQVVIDTSLPFRSNNYSKILSVSPIAVPALARAQFSVKGINLNRPATRLLCALEGKYLACEDAHESMDQCSKEHDELQCVQFSCSVPVMLGRGFIEIEDQGLSSSFYPFIVAEEDVCSEICVLEPLLESTVIDPDIEGAGKFKAKSEAMDFIHEMGWLLHRSRLKSRLVHLNTSAEAFPLKRFKWLMDFSLDHDWCAVVKKLLNLLLDGTVDSGDYASLYLAISDMGLLHRAVRRNSRQLVELLLRYVPENRPIKLGPEDEALVDEGNLSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKIYKRQAAAHVVVEIPCNSTDCSTDQKQIGSSTSFEIGKAEQRSIQGHCKLCDHKLSCRAVVGRSLVYKPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLDFGTS 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g0426 1007 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Dere02g0426 1007 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Dere02g0426 1007 Pfam SBP domain 153 226 IPR004333 GO:0003677
Dere02g0426 1007 MobiDBLite consensus disorder prediction 217 238 - -
Dere02g0426 1007 MobiDBLite consensus disorder prediction 359 379 - -
Dere02g0426 1007 SUPERFAMILY Ankyrin repeat 775 893 IPR036770 -
Dere02g0426 1007 SUPERFAMILY SBT domain 151 232 IPR036893 GO:0003677|GO:0005634
Dere02g0426 1007 Gene3D - 750 909 IPR036770 -
Dere02g0426 1007 Gene3D - 143 214 IPR036893 GO:0003677|GO:0005634
Dere02g0426 1007 MobiDBLite consensus disorder prediction 359 374 - -
Dere02g0426 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 88 892 IPR044817 GO:0003677
Dere02g0426 1007 MobiDBLite consensus disorder prediction 420 453 - -
Dere02g0426 1007 MobiDBLite consensus disorder prediction 70 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g0426 Dere-ChrDere02 4233783 4241331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere02g0426 1 1007 SBP-box Gene Family AT3G60030 54.086 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere02g0426 SBP 9.1e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g0426 02 4233783 4241331 Dere02g0426 02 4233783 4241331 ECH